Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1176 ATGCTAAATTTTCAAAATCTCGCTCTTCTGCTGACGCTGTTGCTTCTGCTATGGAAGCCTGCCATATGCAAAAATGGGTGCACGGAAAAGTGTGGCCCCATTCACATTCAATTCCCATTTCACCTCAAAAATAGCAAGTTGAATCACACCATGGGCTATCCTCGTGGGTTCGATCTGTTGTGTACGGATTCAGGTAAGACTGTGTTGGATCTGCCTTCTGTTCCAATAAAATTGTATGTGAAAAGAATAGATTACAAGTCACAGCAAATCCAGTTCTACGACCCTCAAAATTGCCTTCCTAGGCAGCTCATGAACCTCGGCAATTCCTCTATTTCACCATTTAAATTCCTACCATTCGAACCATTCCCATATGACTACCGCAATATTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGATTCTGGAAATGACTTTCTTGATCCCGAGATAGTATCGTGCACAAAGTTGAGTGATGTTTACTCCGTCCAGTGGTATGTACGGGATTATATGGAGAACACCGTGTTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGCAGATACAAGAATGGTACCCAAAGTGAAATTGAATGTATTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGGGGGAATAGGTGGTTTCTTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGTATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACCAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAGAGTTTGGGAGAAGGAGCTCATGGAGCAGTGTTCAAGGGAATGCTCTCCCGTGATATTCTCGTTGCTGTCAAGATACTCAATGACGCTGTAGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCATGTTAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCCACCGAGCTCTTGTCTATGATTTCTTCCCAAATGGATCACTGCAGAGATTCTTAGCTCCACCCGACAATAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAAAGGGATTGAGTATCTCCATCTGGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGTTAGATGATCACTTCAATCCAAAGATCACTGATTTTGGACTTGCTAAATTGTGTCCTAAAAATCAAAGTACTGTGTCTGTGACTGCAGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTCTCTTATAAGTCTGACATTTACAGCTATGGAATGTTGCTTCTGGAGATGGTAGGAGGGAGAAAGAATACAAATATGTCAGTGGAGGAAAGTTTCCAAGTTCTGTACCCTGAGTGGATCCATAATTTGGTGGAGGCACGAGACGTGGAAGTTACAATTGAGGAGGAGGGAGATGCTAAAATTGCAAGGAAACTTGCCATTATAGGACTTTGGTGTATTCAGTGGAACCCAGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTGCACCCCCTACTCCTTTTGATAAGACCGGTTCCTCAAGAACAAATGCAGCTGTTCAAACAAGACACCAGAATTTCGAGTTGGAAATTATTCATGAAATGGAAGAGTAA 1800 0.4256 MLNFQNLALLLTLLLLLWKPAICKNGCTEKCGPIHIQFPFHLKNSKLNHTMGYPRGFDLLCTDSGKTVLDLPSVPIKLYVKRIDYKSQQIQFYDPQNCLPRQLMNLGNSSISPFKFLPFEPFPYDYRNISFFRCNSMSCPILQLDSGNDFLDPEIVSCTKLSDVYSVQWYVRDYMENTVFAEWTSPNCSSCEAQGSKCRYKNGTQSEIECIVCPTNGLPTSTIVLIAAGGIGGFFLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVAKGIEYLHLGCDHRILHFDINPHNVLLDDHFNPKITDFGLAKLCPKNQSTVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSVEESFQVLYPEWIHNLVEARDVEVTIEEEGDAKIARKLAIIGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIAPPTPFDKTGSSRTNAAVQTRHQNFELEIIHEMEE* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1176 599 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 598 IPR045874 GO:0004672
Vra6g1176 599 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vra6g1176 599 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vra6g1176 599 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 39 598 - -
Vra6g1176 599 Gene3D Transferase(Phosphotransferase) domain 1 361 563 - -
Vra6g1176 599 Pfam Protein kinase domain 290 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1176 599 ProSiteProfiles Protein kinase domain profile. 286 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1176 599 SUPERFAMILY Protein kinase-like (PK-like) 269 557 IPR011009 -
Vra6g1176 599 Gene3D Phosphorylase Kinase; domain 1 259 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1176 Vra-Chr6 20024927 20034526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1176 180 569 Receptor kinase-like Gene Family AT1G66910 41.748 5.01e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1176 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1176 - - gmx:100819302 978.778