Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1175 ATGGAAAACGAAGGCTGGAGTAGGTGTTCTTTCTGTGCAGGTACTCTGGTATCAATATTGGCTACAATTATTCTCCTACTGCAACCTGATAACTGCCTCGCTAAGCGACACCCACCATGTCCTACTTCATCATGCGGCCAAATTCGCAACATAAGTTACCCATTTAGGCTGAAAGGCGACCCAGGTCTGTGCGGCGACCCAAGGTATGAGTTAGATTGCGTTAACAACGCTACTCTCTTATTAACCTTTTCCTCGGCAAAATACCTTGTACGAGAGATCGACTACAAGGGATACAAAATCGTTCTTAGAGACCCAGGTCAGGACGAGGACGCTAATTGCTCTTTCATCCCTCGCTATTTCTTATCGGCTCCGGTTGTCCCATATCATTTCGCAGCGGTTGTATATAATTGCCCCACTCTCTTGTTCTCGGCAGTTAGCCCAGGTGATTTCGGATCGGAGCCGTTCACTTGGGAATACTGGTATACTGTTAGAATAGGATACTTCAATTGCTTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGACAGGAGTGGATGTGGCAGCGGAGGGCACATGTACGCCGTATTAGGATCTTTGTGTGATGTTTTTAATGTGAAGGACATCAAGGTTGGATGCGATCTGATGGTGGCTACGGTCTGGACACCGAAGCAGAATGTTACCTACCACAAGTATGGTGAGTCTGAAAGCTGGGAGGTTGAAGTGCTTGAAGGAATATCGGAGCGGAATGTTACATATGATGATATCCAACGCAAAATAAGTGAGGGATTTTGGTTGTCCTGGTTGCCGATTGTTTGTGAGGATCGATGTGGAAAGGGGAGGGGGTGTCATCTTATCAATCAATCCAGCGGAGGAACCTTGTGTCGTAACTGTTACTACGGTTACCATGACAGCCAAAAGTGCCGACCTTGGCAAAAGGTTTTGGGCAATATTGAAGCTTATCTTGGAGACATTATTTATGGAATAGGTAGCAGAATACCATTCAGTACGAAACAAATTTACGAACCTCTTGGACTGTATGGAGGAATATTCATAGGACGACAAATTATACCGATATTTTTGGCTGCCAGATATATGTTTGGAGTTGTACTTATTTTTGTGTTATTCATCTGCAAATGGCGACGAAGACATTCTTCAATATATGAAAATATTGAAAATTTCTTGCTNGATAGTCATCTAAATCCCATCAGGTACGAATACAACGAAATAGAAAAAATGACCAAAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCGAAGTGGATTAGATGTAGCTGTAAAGATGTTGACCAAATCCAATGATAATGGACAAGATTTCATAAATGAAGTTGCTACCATCGGAACAATACATCATGTAAATGTGGTGAGGCTTATTGGATATTGTGTTCATAGAAAAACACGTGCTCTAGTTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAGAAAGCACTCATTTAAGCTATGAAAAAATACATGAAATATCTCTTGGAATAGCACGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACGTGCAAAGCTACATGCTACAATTGATGGAGTTGTGAATATGACTGCAGCAAGGGGAACATTGGGCTATATGGCTCCAGAGTTATATTACAACAATATGGGTGGAGTAACCTATAAAGCTGATGTGTACAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGGAACTCAAATCCTGATGCTGAACATTCAAGTCAAAATTATTTTCCTTTTTGGATTTATGATCAATTTAAAACAGAGAAAAACATTGACATGCAATATGCTTCGTCAGAAGAAGAGAATATTCTAGTTAAAAGGATGTTCTTAATTGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAAAAAGGTAATAGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAAACCTTCTTTTTACAATATTGAAGCATACAAACATGATGATATTGGCTCTGATGTCACCGAGTACACTTACTCTGCTAGTCAGCATGATGAAAGCATAACATCGGATTCACCAAAGAATATTGAAACGGGCATAAATAAGATAACTTAA 2244 0.3971 MENEGWSRCSFCAGTLVSILATIILLLQPDNCLAKRHPPCPTSSCGQIRNISYPFRLKGDPGLCGDPRYELDCVNNATLLLTFSSAKYLVREIDYKGYKIVLRDPGQDEDANCSFIPRYFLSAPVVPYHFAAVVYNCPTLLFSAVSPGDFGSEPFTWEYWYTVRIGYFNCLNPVSDDPRYVKVDRSGCGSGGHMYAVLGSLCDVFNVKDIKVGCDLMVATVWTPKQNVTYHKYGESESWEVEVLEGISERNVTYDDIQRKISEGFWLSWLPIVCEDRCGKGRGCHLINQSSGGTLCRNCYYGYHDSQKCRPWQKVLGNIEAYLGDIIYGIGSRIPFSTKQIYEPLGLYGGIFIGRQIIPIFLAARYMFGVVLIFVLFICKWRRRHSSIYENIENFLLDSHLNPIRYEYNEIEKMTKGFKVKLGQGGFGAVYKGKLRSGLDVAVKMLTKSNDNGQDFINEVATIGTIHHVNVVRLIGYCVHRKTRALVYEFMSNGSLDKYIFSKEESTHLSYEKIHEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGRAKLHATIDGVVNMTAARGTLGYMAPELYYNNMGGVTYKADVYSFGMLLMEMTSKRRNSNPDAEHSSQNYFPFWIYDQFKTEKNIDMQYASSEEENILVKRMFLIALWCIQLNPSDRPSMKKVIEMLEGVIESLELPPKPSFYNIEAYKHDDIGSDVTEYTYSASQHDESITSDSPKNIETGINKIT* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1175 747 ProSitePatterns Protein kinases ATP-binding region signature. 422 444 IPR017441 GO:0005524
Vra6g1175 747 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Vra6g1175 747 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 719 IPR045874 GO:0004672
Vra6g1175 747 Pfam Protein kinase domain 420 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1175 747 Gene3D Transferase(Phosphotransferase) domain 1 491 697 - -
Vra6g1175 747 ProSiteProfiles Protein kinase domain profile. 416 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1175 747 SUPERFAMILY Protein kinase-like (PK-like) 401 688 IPR011009 -
Vra6g1175 747 SMART serkin_6 416 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1175 747 Gene3D Phosphorylase Kinase; domain 1 394 490 - -
Vra6g1175 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Vra6g1175 747 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 16 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1175 Vra-Chr6 19996919 20000551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1175 405 732 Receptor kinase-like Gene Family AT5G38280 47.305 5.30e-98 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1175 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1175 - - gmx:100820366 920.228