Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1172 ATGCTAAATTTTCAAAATCTCGCTCTTCTGCTGACGCTGTTGCTTCTGCTATGGAAGCCTGCCATATGCAAAAATGGGTGCTCGGAAAAGTGTGGCCCCATTCACATTCAATTCCCATTTCACCTCAAAAATAGCAAGTTGAATCACACCATGGGCTATCCTCGTGGGTTCGATCTGTTGTGTACGGATTCAGATAAGACTGTGTTGGATCTGCCTTCTGTTCCAATAAAATTGTATGTGCGAAGAATAGATTACAAGTCACAGGAAATCCAACTCTACGACCCTCAAAATTGCCTTCCTAGGCAGCTCATGAAGCTCGGCAATTCCTCTATTTCACCATTTAAATTCCTATCATATCAGGACCGGAATGTTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGATTCTGGATATGACTTTCTTGATCCCGAGATAGTATCGTGCACAAAGTTGAGTGATGTTTACTCCGTCCAGTGGGATGTAGAGGATATGGAGAACACCGTGTTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGTAGATACAAGAATGGTACCGAAAGTGAAATTGAATGTTTTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGGGGGAATAGGTGGTTTCTTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGTATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACCAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAGAGTTTGGGAGAAGGAGCTCATGGAGCAGTGTTCAAGGGAATGCTCTCCCGTGATATTCTCGTTGCTGTCAAGATACTCAATGACGCTGTTGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCATGTTAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTCCCAAATGGATCACTGCAGAGATTCTTAGCTCCACCCGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAAAGGGATTGAGTATCTCCATCTGGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGTTAGATGATCACTTCAATCCAAAGATCACTGATTTTGGACTTGCTAAATTGTGTCCTAAAAATCAAAGTACTGTGTCTGTGACTGCAGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTCTCTTATAAGTCTGACATTTACAGCTATGGAATGTTGCTTCTGGAGATGGTAGGAGGAAGAAAGAATACAAATATGTCAGTGGAGGAAAGTTTCCAAGTTCTGTACCCTGAGTGGATCCATAATTTGGTGGAAGCACGAGACGTGGAAGTTACACTTGAGGAGGAGGGAGATGCTAAAATTGCAAGGAAACTTGCCATTATGGGACTTTGGTGTATTCAGTGGAACCCAGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTCCACCCCCTACTCCTTTTGATAAGACCGGTTCCTCAAGAACAAATGCAGCTGTTCAAACAAGACACCAGAATTTCGAGTTGGAAATTATTCATGAAATGGAAGAGTAA 1782 0.427 MLNFQNLALLLTLLLLLWKPAICKNGCSEKCGPIHIQFPFHLKNSKLNHTMGYPRGFDLLCTDSDKTVLDLPSVPIKLYVRRIDYKSQEIQLYDPQNCLPRQLMKLGNSSISPFKFLSYQDRNVSFFRCNSMSCPILQLDSGYDFLDPEIVSCTKLSDVYSVQWDVEDMENTVFAEWTSPNCSSCEAQGSKCRYKNGTESEIECFVCPTNGLPTSTIVLIAAGGIGGFFLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVAKGIEYLHLGCDHRILHFDINPHNVLLDDHFNPKITDFGLAKLCPKNQSTVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSVEESFQVLYPEWIHNLVEARDVEVTLEEEGDAKIARKLAIMGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIPPPTPFDKTGSSRTNAAVQTRHQNFELEIIHEMEE* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1172 593 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 592 IPR045874 GO:0004672
Vra6g1172 593 SUPERFAMILY Protein kinase-like (PK-like) 263 551 IPR011009 -
Vra6g1172 593 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Vra6g1172 593 Gene3D Phosphorylase Kinase; domain 1 254 354 - -
Vra6g1172 593 Pfam Protein kinase domain 284 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1172 593 Gene3D Transferase(Phosphotransferase) domain 1 355 556 - -
Vra6g1172 593 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vra6g1172 593 ProSiteProfiles Protein kinase domain profile. 280 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1172 593 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 39 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1172 Vra-Chr6 19873085 19875222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1172 38 563 Receptor kinase-like Gene Family AT1G66910 35.392 1.56e-102 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1172 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1172 - - gmx:100819302 978.778