Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1171 ATGGAAAATGAAGGGTGGAGTAGGTGTTCTTGCTCTGCAGGTACTCTGTTATCAATATTGGCTACAATTATTCTCCTACTCCAACCAGATAATTGCCTCGCTAAGCAACACCCACCATGTCCTACTTCATCATGCGGCCAAATTCGCAACATAAGTTACCCATTTCGGCTGAAAGGCGACCCTGGTCAGTGCGGCGACCGAAGGTATGAGTTAGATTGCGTTAACAACGCCACTCTCTTATTAACCTTTTCCTCGGCAAAATACCTTGTACGAGAGATCGATTACAAGGGATACAAAATCGTTCTTAGAGACCCAGGTCAGGATGAGGACGCTAATTGCTCTTTCATCCCTCGCTATTTCTTAGCGGCTTCGTTTGGCCCAGATGATTTCGGATCGGAGCGTTTCACTTGGGAATACTGGTATACTGTTGGAATAGGATACTTCAACTGCTTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGACAGGAGTGGATGTGGCAGCGGAGGGCACGTGTACGCCGTATTAGGATCTTCGTATGATGTTTTTATTAATGTGAAGGACATCAAGGTTGGATGCGATCTGATGGTGGCTACGGTTTGGACACCGAAGCAGAATTTTACCAACTATGGTGATGAAAGCTGGAAGGTTGAAATGCTTGAAGGAAAATCGGAGCGGAATGTTACATATGATGATATCCAACGCAAAATAAGTGAGGGATTTTGGTTGTCGTGGTTGCCGATTGTTTGTGAGGATCGATGTGGAAGGGGCAGGGTGTGTCATCTTATCAATGAATCCAGCAGCGAAGTCCTATGTGAGACCCAAAACTGTCGTTACTACGACAACTCCATCGGAGACTACTGCAAACCTTGGCAAACGGTTTTCGGCCATATTCGAGGAATACGTACCAGAATACCATTCATTACGAAACGATTGCACGACCCTCTTGGATTAATGCAGTATTTTGATGGAGCAATATTCATAGGACGACAAATTATACCAATATTTTTGGCAGGCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTCATCTGCAAATGGCGACGAAGACATTTTTCAATATATGAAAATATTGAAAATTTCTTGCTTGATAGTCATCTAAATCCCATCAGGTACGAATACAACGAAATAGAAAAAATGACCAAAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCGAAGTGGATTAGANGTAGCNGTAAAGATGTTGANCAAATCCAATGATAATGGACAAGATTTCATAAATGAAGTCGCTACCATCGGAACAATACATCATGTAAATGTGGTGCGGCTTATTGGATATTGTGTTCATAGAAAAAAACGTGCTCTAATTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAGAAAGCACCNATTTAAGCCATGACAAAATACATGAAATATCTCTTGGAATAGCGCGTGGGATTGCGTATTTGCATCAAGGTTGTGATAAGCAAATTCTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACAATTGATGGTGTTGTGAATATGACCGCAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATATTACAACAATATGGGTGGAGTAACCTATAAAGCTGATGTGTACAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGGAACTCAAATCCTGATGCCGAACATTCAAGTCAAAATTATTTTCCTTTCTGGATTTATGATCAATTTCAAAAAGAGAAAAACATTGACATGCAAGATGCTTCAGAAGAAGAGAATATTCTAGTTAAAAAAATGTTCTTAATTGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAACAAGGTATTAGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAAGCCTTCCTTTTACAATATTGAAGCATATGAACATGATGATATTAGCTCTGATGTCACTGAGTACACTTATTCTACTAGTCAGCATGATGAAAGCATAACATCGGATTCACCAAAGAATATTAAAACCGGCATAAATAAGATAACTTAA 2172 0.3932 MENEGWSRCSCSAGTLLSILATIILLLQPDNCLAKQHPPCPTSSCGQIRNISYPFRLKGDPGQCGDRRYELDCVNNATLLLTFSSAKYLVREIDYKGYKIVLRDPGQDEDANCSFIPRYFLAASFGPDDFGSERFTWEYWYTVGIGYFNCLNPVSDDPRYVKVDRSGCGSGGHVYAVLGSSYDVFINVKDIKVGCDLMVATVWTPKQNFTNYGDESWKVEMLEGKSERNVTYDDIQRKISEGFWLSWLPIVCEDRCGRGRVCHLINESSSEVLCETQNCRYYDNSIGDYCKPWQTVFGHIRGIRTRIPFITKRLHDPLGLMQYFDGAIFIGRQIIPIFLAGRYLFGVVLILVLFICKWRRRHFSIYENIENFLLDSHLNPIRYEYNEIEKMTKGFKVKLGQGGFGAVYKGKLRSGLXVAVKMLXKSNDNGQDFINEVATIGTIHHVNVVRLIGYCVHRKKRALIYEFMSNGSLDKYIFSKEESTXLSHDKIHEISLGIARGIAYLHQGCDKQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNMTAARGTLGYMAPELYYNNMGGVTYKADVYSFGMLLMEMTSKRRNSNPDAEHSSQNYFPFWIYDQFQKEKNIDMQDASEEENILVKKMFLIALWCIQLNPSDRPSMNKVLEMLEGVIESLELPPKPSFYNIEAYEHDDISSDVTEYTYSTSQHDESITSDSPKNIKTGINKIT* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1171 723 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 695 - -
Vra6g1171 723 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Vra6g1171 723 ProSiteProfiles Protein kinase domain profile. 393 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1171 723 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Vra6g1171 723 Gene3D Phosphorylase Kinase; domain 1 371 467 - -
Vra6g1171 723 MobiDBLite consensus disorder prediction 703 723 - -
Vra6g1171 723 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 695 IPR045874 GO:0004672
Vra6g1171 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Vra6g1171 723 Gene3D Transferase(Phosphotransferase) domain 1 468 673 - -
Vra6g1171 723 SUPERFAMILY Protein kinase-like (PK-like) 378 664 IPR011009 -
Vra6g1171 723 Pfam Protein kinase domain 397 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1171 723 SMART serkin_6 393 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1171 Vra-Chr6 19857403 19861718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1171 382 705 Receptor kinase-like Gene Family AT5G38280 47.734 2.21e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1171 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1171 - - gmx:100820366 916.376