Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1160 ATGTCTATGGATCTAAAGAAATCTAACAAGATCAGAGAAATTGTTAGACTTCAACAGATCCTCAAAAAATGGAGAAGGTTAGCCAATTCTTCAAAAGCCACTGCTACCACCAATTTGGCCACTTCCACAACCACCACCAGTAAGAGTATGAAGTTTCTGAAGAGAACCCTTTCCCTATCAGAACGTGAGGGAGGGTCAAGCAATGTTGTTCCAAAAGGCTACCTAGCTGTTTGTGTTGGTGAAGAGCTCAAGAGGTTCACTATACCAACTGAGTATTTGGGTCACCAAGCGTTTCAGATTCTTCTGAGAGAAGCAGAAGAAGAATTTGGCTTTCAACAAACAGGTGTCCTCAGGATTCCTTGTGAAGTTGCTGCTTTTCAGAGTATCTTGAAGATGGTGGAAAGTAAAGGGGACCTGTTTTCCTCCCAAGAATGTAGACTCAGCATTGAAGAGATGCTGATGGGTTACTGCTCAGAAAACCAGATTGCACATTCTCACCATCCTCAAAGTCCATTATGCAGATAG 525 0.4248 MSMDLKKSNKIREIVRLQQILKKWRRLANSSKATATTNLATSTTTTSKSMKFLKRTLSLSEREGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAAFQSILKMVESKGDLFSSQECRLSIEEMLMGYCSENQIAHSHHPQSPLCR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1160 174 PANTHER SAUR FAMILY PROTEIN 7 174 - -
Vra6g1160 174 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 174 IPR003676 GO:0009733
Vra6g1160 174 Pfam Auxin responsive protein 23 133 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1160 Vra-Chr6 19057748 19058485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1160 3 174 Calmodulin-binding Proteins AT2G24400 54.645 1.91e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1160 K14488 - gmx:100779842 281.952