Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1158 ATGGCGTCGAACACGAAGAAGAAAGTGTTTGGTTCAGAAGAAGCTTTAGCGATGGTTGAGGAACTGAGAGCAGCGTTTGATTGTGGCAAGACGCGTGGATGCGAATGGAGAATTTCCCAGTTGAAGGCCCTCATCAAGTTGAGTGAAGAACATGAGAAAGAGATTGTTCAAGCTCTTCACTCAGATCTGTCTAAGTCTGAAACTGAAGCCTTTGTGCAAGAGATTGCTATGTTGAAAAACTCAAGTAAAGTTGCGCTCAAAGAATTGAAACATTGGATATCTCCTGAAAAGGTCAAAACTTCACTCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAGCCACTGGGGGTTGTTCTAGTCATCTCGGCATGGAACTACCCTTTTCTTTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTAAAACCATCAGAAATTGCTCCAGCCACATCATCACTGATGGCAAAACTGCTGGGAGACTACATGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCCGCATTGCTGGAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGTGTTGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTTGTGCTGGAGCTCGGAGGAAAATCTCCGGTTGTAGTCGATTCAAACATCAATTTAAAGGTAGCAACAAGACGAATAATTGCCGGGAAGTGGGGTTGTAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGAATATGCTCCCAAGTTGGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAGAAGATTTGTCTCGTATTGTAAACTCCAATCACTTCAATCGCTTGAAAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTCATGGAGGCAAAAAGGATGAAATTAAATTGAAGATTAGCCCCACTCTTCTCTTGGATGTCCCACGGGATTCTTTGATTATGAGTGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACAGTAGACAAACTGGAAGAAAGCTTTGTTGTGATCAATTCAGGACCAAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAACTATTTGTTAGGAATATTTCAGCTGGCGGCGTGGTTGTTAATGACACTACTTTACATCTTGCGGTTCATACTTTGCCATTTGGAGGAGTTGGTGAGAGTGGAGTGGGGGCATACCACGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAGGCAGTTCTCTATCGCAGTTTTATTGGTGATGCATCAGTTAGGTACCCACCATACACAAGTACAAAGCAAAGATTGCTAAAAGCTCTCATTGGTGGTGGCATACTTGGTGTCCTTTCCCCAACTTGTTCAAACTTGCCACCAAAGTGTTGA 1476 0.4207 MASNTKKKVFGSEEALAMVEELRAAFDCGKTRGCEWRISQLKALIKLSEEHEKEIVQALHSDLSKSETEAFVQEIAMLKNSSKVALKELKHWISPEKVKTSLATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEIAPATSSLMAKLLGDYMDNSCIRVVEGAVDETSALLEQKWDKIFYTGNGRVARVVMAAAAKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGCNNGQACISPDYVITTKEYAPKLVDALKTELEKFYGKNPLESEDLSRIVNSNHFNRLKKLLDDDKVSGKIVHGGKKDEIKLKISPTLLLDVPRDSLIMSEEIFGPLLPILTVDKLEESFVVINSGPKPLAAYIFTNNKKLKELFVRNISAGGVVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFIGDASVRYPPYTSTKQRLLKALIGGGILGVLSPTCSNLPPKC* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1158 491 Pfam Aldehyde dehydrogenase family 12 444 IPR015590 GO:0016491
Vra6g1158 491 SUPERFAMILY ALDH-like 17 455 IPR016161 GO:0016491
Vra6g1158 491 PANTHER ALDEHYDE DEHYDROGENASE 4 480 IPR012394 GO:0006081
Vra6g1158 491 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 220 227 IPR029510 GO:0016491
Vra6g1158 491 PANTHER ALDEHYDE DEHYDROGENASE 4 480 - -
Vra6g1158 491 PIRSF ALDH 2 476 IPR012394 GO:0006081
Vra6g1158 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 442 IPR016162 GO:0016491
Vra6g1158 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 224 424 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1158 Vra-Chr6 18896258 18916211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1158 71 480 Aldehyde Dehydrogenase Gene Family AT1G44170 75.303 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1158 K00128 - gmx:100816594 769.229