Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1152 ATGGGTTACATGGGTAGGTGTTGGTTGGTTGGGGTCATAATTGTGGTGTGGTGTGCCATCTTGCTGGGCACCGCTGGAGTGAAAGGGTATCCAGCTGAGGATTTGGTGGTGAGATTGCCTGGACAACCTAATGTTGGGTTTAAGCAATTTGCTGGGTATGTTGATGTTGATGTCAAACATGGAAGGAGCCTCTTCTACTATTTTGTGGAGGCTGAGCAAGACCCTGACAAGAAGCCTCTCACACTTTGGCTCAATGGAGGCCCTGGATGTTCTTCCGTTGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCTAATGGTGATGGACTTGGTCTCCGAAGAAATTCCATGTCTTGGAATAAAGCATCCAATCTCATTTTTGTGGAGTCTCCTGCTGGAGTTGGCTGGTCATACTCAAATACAACGTCAGATTACAATACTGGAGATCTCTCCACTGCCAATGATATGTACTTGTTCATGTTGAAATGGTACGAGAAATTTCCATCATACAGAACAAGGGAGCTGTTCCTCACTGGAGAAAGCTATGCAGGACACTATGTACCTCAATTAACTAATGTTCTCTTGGACCATAATGCTGGTTCAAGTGGTTTCAAATTCAACATCAAAGGAGTTGCTATTGGAAACCCACTTTTGAGACTTGATCGGGATGCACCAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAATGATTGTAATTTTGATGACTATTCCTATGAAAGTCCTCACAACGTTTCTAATTCGTGCAACAATGCCATATATGAAGCAAATCTCATTGTTGGCAACTACATAAACAATTATGATGTGATTCTAGATGTTTGTTATCCATCCATAGCGGAACAAGAACTGAGATTGAAAAAGATGGCAACGAAAATAAGTGTAGGTGTGGATGTGTGTATGAGTCTAGAAAGACGGTTTTACTTCAATCTCCCAGAGGTTCAGAAGGCTCTTCATGCAAACCGTACAAACCTTCCTTATAGGTGGTCCATGTGTAGTAATGTTGTAAACTACAGTGACACAGATGGTAACATCAACATCCTTCCAATTCTCAAAAGAATAGTCCAAAACCATATCCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTATTGGGATCTCGAACACTAATGCGTGAACTAGCTAATGAATTGCATTACAAGATTACAGTCCCATATGGGGCCTGGTTCCACAAAGGGCAGGTTGGAGGTTGGGTGACTGAGTATGGAAATTTGTTAACTTTTGCAACTGTAAGGGGTGCTGCTCATATGGTACCTTATTCTCAACCTTCAAGAGCACTGCATCTGTTCAGTTCATTTGTGCGTGGTAGGAGGTTACCCAACACAACACATTCTTCCATTGATGATTGA 1431 0.4221 MGYMGRCWLVGVIIVVWCAILLGTAGVKGYPAEDLVVRLPGQPNVGFKQFAGYVDVDVKHGRSLFYYFVEAEQDPDKKPLTLWLNGGPGCSSVGGGAFTELGPFYPNGDGLGLRRNSMSWNKASNLIFVESPAGVGWSYSNTTSDYNTGDLSTANDMYLFMLKWYEKFPSYRTRELFLTGESYAGHYVPQLTNVLLDHNAGSSGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNDCNFDDYSYESPHNVSNSCNNAIYEANLIVGNYINNYDVILDVCYPSIAEQELRLKKMATKISVGVDVCMSLERRFYFNLPEVQKALHANRTNLPYRWSMCSNVVNYSDTDGNINILPILKRIVQNHIPVWVFSGDQDSVVPLLGSRTLMRELANELHYKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYSQPSRALHLFSSFVRGRRLPNTTHSSIDD* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1152 476 Pfam Serine carboxypeptidase 41 463 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 SUPERFAMILY alpha/beta-Hydrolases 32 466 IPR029058 -
Vra6g1152 476 Gene3D - 364 463 - -
Vra6g1152 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 470 IPR001563 GO:0004185|GO:0006508
Vra6g1152 476 Gene3D - 317 354 - -
Vra6g1152 476 PANTHER CARBOXYPEPTIDASE 8 470 - -
Vra6g1152 476 Gene3D alpha/beta hydrolase 31 293 IPR029058 -
Vra6g1152 476 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1152 Vra-Chr6 18646911 18652426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1152 323 466 Calmodulin-binding Proteins AT2G22960 25.694 2.14e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1152 K16297 - gmx:100801752 890.567