Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1150 ATGGCGAGAATCCTTGGAGGAAAGTATAAAATCGGTGAAAAAATTGGGAGCGGATCATTTGGTGAAATTTACATTGGATCACATATAGATACTTCTGAAATCGTAGCCATCAAAATGGAGAGCAGGAAAAGCAATCAACCACAGCTATTGTATGAGTCCAATTTATATAGTATTCTTCAAGGAGGAAGTGGAATTCCAAAAATGAAATGGTGTGGCTCTGATGGGGACAATAATGTTCTTGTTATTGAACTTCTGGGACCAAGTCTTGAAGATCTCTTTTACTTCTGTGGCAATAAATTATCTCTCAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACACGGATAGAATATTTACATTCTAAAGGATTTTTGCATAGAGACATCAAACCTGATAACTTCCTTATGGGTCTCGGAAAGAAAGCAAATCAGATTTACATGATTGACTTTGGACTAGCAAAAAGATACAGGGATCCCATCACAAATAAGCATATCCCTTACAGAGAAAACAAAGGTTTAACAGGGACTGCCCGTTATGCAAGTTACAATACTCACTCAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCTCTTGGCTATGTTTTAATGTACTTTTTAAGAGGAAGTCTTCCATGGCAAGGTTTGCAAGCTGCCACCAAAAGACAAAAGTATGATAAAATTTGCAAAAAGAAGTTATCAACGCCCATTGAGGTACTTTGCAAGTCATATCCTGTGGAGTTTGCCTCTTACTTTCATTATTGTCGCTCTTTGACATTTGATCAACGACCAGATTATGGTCTTTTGAAGCGTTTGTTTCGTAATCTGTTCACTCGTGCAGGATATGATTCTGACTATTTATTTGATTGGACTATTCTAAAATATCAACAGATGCAACAACAGAAGACACAAAGTCAACCAAATGCTCCACTAGCTGTGCCTACTAGTCTTGAACCACTGGAGGAGGATAATAATAAAGGAGTCAATGGTTCAACTCAACTTGATGCAGAAAGACCATTAATCAGTGTTGATCATCAACGGACTGTGAACAATGGTTCATCTATGCCCACTGCTATGCCCAGAGTCTCCACAGAAAATGTCTCAAAACCAGTAAGGCTTCGCCGAGTTTCATCAACAAAACAATAG 1146 0.3831 MARILGGKYKIGEKIGSGSFGEIYIGSHIDTSEIVAIKMESRKSNQPQLLYESNLYSILQGGSGIPKMKWCGSDGDNNVLVIELLGPSLEDLFYFCGNKLSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQIYMIDFGLAKRYRDPITNKHIPYRENKGLTGTARYASYNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAATKRQKYDKICKKKLSTPIEVLCKSYPVEFASYFHYCRSLTFDQRPDYGLLKRLFRNLFTRAGYDSDYLFDWTILKYQQMQQQKTQSQPNAPLAVPTSLEPLEEDNNKGVNGSTQLDAERPLISVDHQRTVNNGSSMPTAMPRVSTENVSKPVRLRRVSSTKQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1150 381 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1150 381 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra6g1150 381 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Vra6g1150 381 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1150 381 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 343 - -
Vra6g1150 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra6g1150 381 MobiDBLite consensus disorder prediction 344 381 - -
Vra6g1150 381 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vra6g1150 381 MobiDBLite consensus disorder prediction 319 381 - -
Vra6g1150 381 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1150 381 PANTHER CASEIN KINASE-RELATED 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1150 Vra-Chr6 18552875 18591651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1150 2 236 Miscellaneous Gene Families AT3G23000 26.316 4.92e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra6g1150 Pkinase 9.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1150 K08960 - gmx:100782913 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1040 5 16787962 16796070 Vra6g1150 6 18552875 18591651 PCT