Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1149 ATGAACATGCCTTTCAAGAACCATTTACTGGTGTTCATCATGACGGTTCTTTTTTTCATTTCTAATGTTCAAGCACAAAACAATGACACAGATAGCATGCAAGATCTTCCTCAACCTGTTCATCCAAGCAAGATGGTTGTAGTAGTGGCTCTCTCAATATTGTTCACTGTATCATTTCTCTTACTTGTCTACATAAGGTTCCGCAGAAGCATCCCTCTTGAACTTAGCAACAGAAGGAGCCCTGATTCACCAAATTTTCAAGCACAAACACAATCAAGATCAAGACATTCAGGGATAGACAAAAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTAAAGGGGTCCAAACAAGGCCTAGAGTGCACAGTTTGCTTATCACAGTTTGAGGACACTGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTAGAAAGTCACTCTACATGCCCTCTTTGCAGGAATAATATTGACCCTTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAACCTTCTTCCCATCAAGGCTCATCATCGTCATCAAGGTTTAACATCGGCAGCAGGTTTTGGAATTTGGGTTGGAGTAACAAGAAAAAGCTTCTCGTTGAGCAAGAGGTTTGTGGAACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAAGAGTGAGATGATTCATCATGTTTCAATTGGAAGATTCTCTCCCTCTAATGAATTTTTTTGCGGAAATCCGAGCCTTTCCTCTATTTTCAACGAGGATGAAAGTTCATTTACGTTATTGAATATAGCTCAGAAGAGATCTATGTCTGATATTGCTCATGTTCCAAGGTTGATAGACATATGCAAGCAGAATAGAATGGAACCAGGTGAGGCATCAAGTGGGAATAACGAGAGGGAAGAGAGGATGAGGAGGATTTGGTTGACAATTGCTCAACGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAATTCAACAGATTTAGAGATAAAACATTTAGCTTCGGATGTTTGA 1185 0.4008 MNMPFKNHLLVFIMTVLFFISNVQAQNNDTDSMQDLPQPVHPSKMVVVVALSILFTVSFLLLVYIRFRRSIPLELSNRRSPDSPNFQAQTQSRSRHSGIDKKVIEALPFFMFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRNNIDPLDIKNFTYSISSRSLRVPSNLTEDTNLEIFVHREPSSHQGSSSSSRFNIGSRFWNLGWSNKKKLLVEQEVCGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLKSEMIHHVSIGRFSPSNEFFCGNPSLSSIFNEDESSFTLLNIAQKRSMSDIAHVPRLIDICKQNRMEPGEASSGNNEREERMRRIWLTIAQRTVQWFAGQERNSTDLEIKHLASDV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1149 394 MobiDBLite consensus disorder prediction 78 94 - -
Vra6g1149 394 SMART ring_2 124 165 IPR001841 -
Vra6g1149 394 Pfam Ring finger domain 123 166 IPR001841 -
Vra6g1149 394 PANTHER RING-H2 FINGER PROTEIN ATL4J 16 295 - -
Vra6g1149 394 PANTHER RING-H2 FINGER PROTEIN ATL4J 302 388 - -
Vra6g1149 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 173 IPR013083 -
Vra6g1149 394 SUPERFAMILY RING/U-box 112 172 - -
Vra6g1149 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 302 388 - -
Vra6g1149 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 295 - -
Vra6g1149 394 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Vra6g1149 394 CDD RING-H2_PA-TM-RING 123 166 - -
Vra6g1149 394 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1149 Vra-Chr6 18542013 18543508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1149 42 385 C3H Transcription Factor Family AT2G20030 42.105 9.03e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1149 K10664 - gmx:100803881 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1035 5 16757691 16758854 Vra6g1149 6 18542013 18543508 PCT