Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1145 ATGAGAGTTTCGGCACGCAATGATAATTCTGGGAAGGAGAGCCGGTCGACCTCGCCGTTATCACCGTCGGAGGCGGCGCCGCCGTCAGAGTCCAAACCGGAGAAGCGCAACCGGGACTCGAACAAGCACCCGGTGTACCGAGGAGTACGCATGAGGAACTGGGGAAAATGGGTGTCGGAAATCCGAGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCCACGCCGGAAATGGCGGCGAGGGCGCATGACGTTGCAGCACTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCGCCTCGCTTCCGCGTCCCGTTTCGTTGGCCCCTCGCGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACACAGACTTCCGTCCTTCGTCCACGTCATTATCATCATCGTTGGTGTCAACAACTTCCTCCTGGTCGTCTTTATCCTCGACGGTTTCAACTGCGGACTTGTCGGCTGAGTCGGAGGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTAGGAAAGGAGTTTGTGTTCGCAGACTCGCAGGACACGTGGATGTATCAGCCGCCGATGCCTTGGTTACAAACCACGTACGATGCATCTCATGCCGACGATGATGTTGTAGAGGCAGAGACTGGGCTTGTCACTGGCTTTAAAAGTTTTCTGTGGGATTAG 708 0.5664 MRVSARNDNSGKESRSTSPLSPSEAAPPSESKPEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAASLPRPVSLAPRDVQAAAAKAAHTDFRPSSTSLSSSLVSTTSSWSSLSSTVSTADLSAESEELSQIIELPRLETSYELGKEFVFADSQDTWMYQPPMPWLQTTYDASHADDDVVEAETGLVTGFKSFLWD* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1145 235 MobiDBLite consensus disorder prediction 10 25 - -
Vra6g1145 235 MobiDBLite consensus disorder prediction 1 46 - -
Vra6g1145 235 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Vra6g1145 235 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 234 - -
Vra6g1145 235 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 12 234 - -
Vra6g1145 235 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vra6g1145 235 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vra6g1145 235 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1145 Vra-Chr6 18368084 18369807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1145 32 210 AP2-EREBP Transcription Factor Family AT5G11590 68.108 7.89e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g1145 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1145 K09286 - gmx:100305349 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1028 5 16714220 16715573 Vra6g1145 6 18368084 18369807 PCT