Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1133 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTTCCTGTTTTAGTTTCTAAAGCTCTCGAACTATTTTTGCAAGATCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCGTTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGAGTTCCTGATTACGGTCATGGTCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGAAGCAAGATGCAAGAGTTGAGCCACACTGGCAGTACTGGTAGAGGAAGAGGCCGGGGTAGAGGAAGAGGCCGTGGCCGAGGACGACCACCTTTAGTAAGAGACACATATCATCAGGATGCTGAATCTGAGCCATGCCCTTCTGTTCAGCCGAGCAACCAACAAAGTGCAAACCCAAGTGTTGCAGTGGACAGTGGTTCTGAGTCAAAAGATATACCAAAGGAGGAGAATGTTGCAGCTCCTGTTGTAAGCGCTGATTCACTCCGGAACATTGACCTGAATGCCATTACGAATGAAAATGATGACAAAAAAGCTAGCGTGGCAGAACCTCCTTCAACAGAGGGCAAGCATGAAGAGATTCTGGGGTGGCCACTTTCTGATGTGGACAAGATGGCCATTGATTCGACACAGCTTGCGCAGCTGGGTAGGCCATTAGAAGAGGAGGAGGAAGATTATGACGAGGAGGAGGGGTAA 849 0.4641 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAVGDDCNDSDEEAKRSKMQELSHTGSTGRGRGRGRGRGRGRGRPPLVRDTYHQDAESEPCPSVQPSNQQSANPSVAVDSGSESKDIPKEENVAAPVVSADSLRNIDLNAITNENDDKKASVAEPPSTEGKHEEILGWPLSDVDKMAIDSTQLAQLGRPLEEEEEDYDEEEG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1133 282 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Vra6g1133 282 MobiDBLite consensus disorder prediction 168 190 - -
Vra6g1133 282 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vra6g1133 282 PANTHER HISTONE SUPERFAMILY PROTEIN 1 280 - -
Vra6g1133 282 MobiDBLite consensus disorder prediction 91 130 - -
Vra6g1133 282 MobiDBLite consensus disorder prediction 262 282 - -
Vra6g1133 282 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vra6g1133 282 MobiDBLite consensus disorder prediction 221 244 - -
Vra6g1133 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 280 - -
Vra6g1133 282 MobiDBLite consensus disorder prediction 91 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1133 Vra-Chr6 17865077 17870053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1133 1 268 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.000 7.92e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra6g1133 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1133 K21752 - gmx:100814712 439.884