Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1125 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCCTATTTTCCTCCCGACCAACCCCAGAAGTTTGCAAATGTTCATAGAATTTTTGGGGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTCAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGACCCTGTCTATGGCTGTGTTGGAGTCATATCACTCTTACAGCATCAACTTCGCCAGCTTCAAATGGATCTCTACTGCGCCAAATCTGAGCTCTCCAGGTACCAAAACCTAAGCACCATCACCACCAATCATACCCTCATGACCTCTGAATCCGCCGCAGCCTTCCACCACCACCACCACCACCACCAGAACAACAACACTGCTAACAGCTTTGGCCGAGACCATCACTACCACTTTCACCACCATCAGTTTTTCCCCAGAGATCAACACCAACAAGTAGCAAGAAGCTTTGATGGAGGCAACAACTACGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGTGGCGATGACCGCCACACTGCCAACCGCACCTAG 651 0.5038 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSTITTNHTLMTSESAAAFHHHHHHHQNNNTANSFGRDHHYHFHHHQFFPRDQHQQVARSFDGGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1125 216 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vra6g1125 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 180 - -
Vra6g1125 216 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vra6g1125 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1125 Vra-Chr6 17785155 17787070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1125 2 214 AS2 family AT1G65620 60.563 6.24e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g1125 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1125 - - gmx:100806890 364.77