Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1123 ATGACACCAGAAATGTTTACAGGTGCATTTGTTTCTACTTTCGTTGAGAGGACTATCGACTCTTTGGCTTCACGTTTTGCGAAAATATTACGTGCAAGAAAATGCGATAAGAATCAACTAAGCGACTTGAAGATGAAGCTCCTAGCCATTGATGTTGTGGCGGATGATGCAGAACAAAAGCAATTCACAGATCCACGTGTCAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTTGTTGATGCAGAAGATATCTTGGATGAAATAGATTACGAACTCTCCAAAAGCAAAGTGGAAGCTGAGTCTCAGAGTGCTGCTACGAAGGTATGGTTGAATTCCGTCAAATCTTCTTTTGTCGGTTTCTTTGAAAATGAAATTGGATCAAGGATGGAACAAGTCATTGAGAACCTAAAAGATCTTGAAACAGAAAGCCGTTATCTAAGTTTGAAAAGGAGTAGTGGTCTTGGGGTTGGATCAGGTAGTAAATTAACATATACATCTTTGCCAAATGAAAGTGTTATCTATGGCAGAGATGATGACAAAGAATCTATCTTTAACTGGCTCACTTCTGAACTTACATCCGACACTGACATCAACCTATCCATACTTTCTATTGTGGGTATGGGTGGATTGGGAAAAACCTCACTTGCTCAACATGTATTCAATGACCCAAGGCTTGAAGGCAAATTTAATATCAAAGCTTGGGTAAGTGTCCCACAGGAATTTGATGTTCTCAATGTATCAAAAGCAATTCTTGAGAGTGTTTCAACATCATCTGTTGATAGTACAAATCTTGAGGGAGTTCACAAAAAATTGAAAGAAAAATTGACGGGAAAGAAATTTTTTCTCGTTTTGGATGACAATTGGAATGAAAATAAATCCAAATGGGAACAAGTGCAGAAAGCTCTTGAGTTTGGGGCCCCAGGAAGTAGGCTTCTTGTCACTACACGGAGCGAGAAGGTTGTTGTTACCATGCGATCTGAAAAGCACCTCCTGCAAGTACTAAGAAAAGATTATTGTTGGGACTTGTTCGCAAAACATGCATTCCAAAGTCCTAATTCTCAACTAGATCCAGATTTCATGGAGATTGGTAAGAAGATAGTTAAGAAATGTAATGGGCTTCCTTTAGCCTTGAAAACAATGGGAAATCTATTATACAATAAGCCATCCCTTCGCGAATGGGAAAGCATTATGAAAAGTGAGATGTGGGATTTTTCAGAAAATGAAAGTGACATACTCCCTGCTTTAAAACTGAGTTATCTCCACCTTCCTTCTCATCTAAAGAAATGTTTTGCTTTTTGTGCCTTATTTCCCAAGGGTTGTGTGTTTGACAAGGAGTGTTTAATTCAACTGTGGATGGCTCAAAATTTTCTGGAAAGCTCTTCAACGATAAAGAGTCTTAAAGAAGTTGGTGAACAGTATTTCAACGATTTATTATCATGGTCTTTCTTTCAACAATTAAATAAGGAAGAGGAAAATGCTTTTATCATGCATGACCTTCTTATGGATTTGGCAAAATACCTTTGTCAAGACATTTGCATCAGGTCAGGAGTCGATGAACCACAAGGAATACACAAAATAACTCGTCATTTTTCATTTGCAACCGATCTCAGTCTAATTTTTTATGGGTTTGGAAATCTGACTGACTCTCGAAAGTTGCATACATTTGTACCAACAGTACGAACAGGATGGAGAAGGTATTGGTGGTGCAAGTCGATAGATGTCTTGTTTTCAAAATTAAAGTACGTACGCTTCTTATCACTGAATGGCTTTCTTGGGCTTACAGAGGTGCCTAAATCTATTGGAAATCTTAAGCATCTTCGTTTATTAGATCTCTCTTATACTAAAATAGAAAAACTATCCGACTCCATAGGTTTACTTTACAAGTTGCAAATACTGAAGTTAAATCATTGTGAAAGATTAAAGGAGCTTCCTTCATGTTTTCTTCAACTCGAAAAATTGTGTTTCCTAGAACTATTCAATACTGAAGTGAAAAATGTGCATATTTTGGGAGAGATGAAGAGTCTCCAAGTATCGATGAATCTCCAAGTATTGATGAATTCGTTTTGTGTTGACATGCATAAGGAACTCAGTATTCAACAATTGGGACAAATCAACCTTCATGGGAGTTTAACCATTAGTGGGCTGCAAAATATTGAGAATCCCTTTCATGCAACAGAAGCATACCTCAAGAACAAACCACACCTTGTGAAGCTAGTGTTCAATTGGAATTGGAATCACAACTCCTCTCTTGATTCAACAAAAGATAAGGATGTAATTGAGAATCTACAACCCTCAAAACACTTGAAGGAGTTGTCAATAAGGAGCTATATGGGTGAACAATTTCCAAATTGGTTACTTGATAATTCATTACCATATCTGGTGTCCTTAGAGTTGAATGAATGTAAATATTGCGAACGTCTACCTCCCCTTGGACTTTTGCCATCTCTTAAGAACTTGAGAATTGAAAAACTTCATGGGATAGTGAATATTGATGCTGATTTTTATGGGAACAATTCTTCTTCCTTTAAATCTCTGGAGAAATTGTATTTCTACCATATGCTAGAATGGGAAAATTGGGAATGTAAAGATTTGACAGATGCTTTTCCACGTCTACAAAAGCTCTCTATAGAATATTGTCCCAAACTGAAAGGACAGCTACCAGAGCTCCTTGTTTCTTTGAAAACACTAGTCATTATAAATTGCGAAAAACTTGAGGTTTTAGCTCCCAGAGCACTAGATTTATATCTAGAAGAGAATGAAAAGGTGTGGTTTGATTGGGCTACAGTGAAAAGCTTCAATTTGGCTGGGTACGGCATGGAGGCACCATTCTTGGATATGGTTCTGGATAACATATCCAACAATTCTATTCAACGCTTGGAGATTAATATATCCAGTTGCGGGGAGATTAATGGATCCAGTTGCGGTTCTCCTCCAAATATTGGTGACTCTGTCTCTCTGTGGACCTTTCCACTACATTTCTTCCCGACACTAAAGAAGCTTACTCTCTGGCACTTAAATAATTTACAGATGATTTCACAAAACCACGCACAAAATCATCTGGAGTGTCTGGATATCGGTTGGTGCCCTAAAATTGAATCATTGCCTAAAAACATGGATATGCTCAAGAGTTTACACATTCGTGATTGTCCAAAACTTGAGCCTTTCACTGAGGGAGATTTGCCATCAAATCTAGAAGAGATTACACTCAGTAATTGCTCTAGACTTCTTGGCTCACTGAAAGGAGCTTTAGGAGACAATCCGTCTTTGAAAACGTTACATATTGAACATTTGGATGCCGAATGTTTTCCTGATGAAGGGTTCTCAATCAACTCTCGTCTCTTAAAAGTCTAA 3351 0.3781 MTPEMFTGAFVSTFVERTIDSLASRFAKILRARKCDKNQLSDLKMKLLAIDVVADDAEQKQFTDPRVRDWLLRAKDVVVDAEDILDEIDYELSKSKVEAESQSAATKVWLNSVKSSFVGFFENEIGSRMEQVIENLKDLETESRYLSLKRSSGLGVGSGSKLTYTSLPNESVIYGRDDDKESIFNWLTSELTSDTDINLSILSIVGMGGLGKTSLAQHVFNDPRLEGKFNIKAWVSVPQEFDVLNVSKAILESVSTSSVDSTNLEGVHKKLKEKLTGKKFFLVLDDNWNENKSKWEQVQKALEFGAPGSRLLVTTRSEKVVVTMRSEKHLLQVLRKDYCWDLFAKHAFQSPNSQLDPDFMEIGKKIVKKCNGLPLALKTMGNLLYNKPSLREWESIMKSEMWDFSENESDILPALKLSYLHLPSHLKKCFAFCALFPKGCVFDKECLIQLWMAQNFLESSSTIKSLKEVGEQYFNDLLSWSFFQQLNKEEENAFIMHDLLMDLAKYLCQDICIRSGVDEPQGIHKITRHFSFATDLSLIFYGFGNLTDSRKLHTFVPTVRTGWRRYWWCKSIDVLFSKLKYVRFLSLNGFLGLTEVPKSIGNLKHLRLLDLSYTKIEKLSDSIGLLYKLQILKLNHCERLKELPSCFLQLEKLCFLELFNTEVKNVHILGEMKSLQVSMNLQVLMNSFCVDMHKELSIQQLGQINLHGSLTISGLQNIENPFHATEAYLKNKPHLVKLVFNWNWNHNSSLDSTKDKDVIENLQPSKHLKELSIRSYMGEQFPNWLLDNSLPYLVSLELNECKYCERLPPLGLLPSLKNLRIEKLHGIVNIDADFYGNNSSSFKSLEKLYFYHMLEWENWECKDLTDAFPRLQKLSIEYCPKLKGQLPELLVSLKTLVIINCEKLEVLAPRALDLYLEENEKVWFDWATVKSFNLAGYGMEAPFLDMVLDNISNNSIQRLEINISSCGEINGSSCGSPPNIGDSVSLWTFPLHFFPTLKKLTLWHLNNLQMISQNHAQNHLECLDIGWCPKIESLPKNMDMLKSLHIRDCPKLEPFTEGDLPSNLEEITLSNCSRLLGSLKGALGDNPSLKTLHIEHLDAECFPDEGFSINSRLLKV* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1123 1116 Pfam Rx N-terminal domain 11 102 IPR041118 -
Vra6g1123 1116 Gene3D Ribonuclease Inhibitor 696 910 IPR032675 -
Vra6g1123 1116 Gene3D - 418 506 IPR036388 -
Vra6g1123 1116 Coils Coil 122 142 - -
Vra6g1123 1116 Gene3D - 158 333 IPR027417 -
Vra6g1123 1116 Gene3D Ribonuclease Inhibitor 933 1116 IPR032675 -
Vra6g1123 1116 Gene3D - 14 123 - -
Vra6g1123 1116 PANTHER OS05G0414200 PROTEIN 21 1037 - -
Vra6g1123 1116 PANTHER DISEASE RESISTANCE PROTEIN RP 21 1037 IPR044974 GO:0006952
Vra6g1123 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 433 IPR027417 -
Vra6g1123 1116 Pfam NB-ARC domain 186 399 IPR002182 GO:0043531
Vra6g1123 1116 Gene3D - 334 417 IPR042197 -
Vra6g1123 1116 PRINTS Disease resistance protein signature 201 216 - -
Vra6g1123 1116 PRINTS Disease resistance protein signature 274 288 - -
Vra6g1123 1116 PRINTS Disease resistance protein signature 370 384 - -
Vra6g1123 1116 PRINTS Disease resistance protein signature 601 617 - -
Vra6g1123 1116 SUPERFAMILY RNI-like 867 1098 - -
Vra6g1123 1116 ProSiteProfiles Leucine-rich repeat profile. 605 626 IPR001611 GO:0005515
Vra6g1123 1116 SUPERFAMILY L domain-like 496 902 - -
Vra6g1123 1116 Gene3D Ribonuclease Inhibitor 564 675 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1123 Vra-Chr6 17738017 17741772 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1123 197 439 WRKY Transcription Factor Family AT5G45050 26.400 2.76e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1123 - - pvu:PHAVU_011G198300g 1304.27