Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1105 ATGGCGTCGTCGGCGTGCGTCACGGACTTGGCTCGAACGGCGGCGTGCAGGGATGGCTCGGCGGCAGCGCATCTCAAAGTGGTGTCAATCTTCGTTATCTTCGTGACGAGCGTGGCGGGGATGTCGTTGCCGGTGCTCCTAGCCGGGATCTTCCGCGGAAAGCCGCTCTACGACAAAGCCATAGTCGTGATTAAGTGTTTTGCGGCGGGGGTAATTCTCTCGACCTCGCTGGTCCACGTGCTCCCCGACGCGTACGCCGCACTCGCCGATTGCCAGGTGGCATCGCGCCACCCGTGGAAGGACTTCCCTTTCGCAGGACTCGTGACGCTTGTGGGCGCTCTTCTGGCGCTCCTGGTGGACCTCGCGGCGAGCTCGCACGTGGAGCACGCGCAGTACGCGCCGGTAGTGGCGCAGGAGAAGGAGTTGGAGCTCGGCGGAGGCTGCCGTGGGTCCGGCGGTGATGGTGAAAGAGGTGAAGAATTGGTGAAACTGAAACAGAGGTTGGTTTCGCAGGTGCTTGAGATTGGGATTATTTTTCACTCTGTGATAATCGGAGTTACCATGGGAATGTCTCAGAACGTTTGTACTATTCAACCTCTCGTTGCTGCTTTGGCATTTCATCAAATATTTGAAGGCATGGGTCTCGGTGGTTGCGTCGCTCAGGCAGGATTTAGCTTTGGAACAACTGCGTATATGTGTTTGATGTTTGCAGTGACAACACCAATGGGGATAATTTTGGGGATGACATTGTTCTCATTGACAGGTTACGATGATAGCAATCCAAATGCTTTAATCCTTGAAGGTTTATTGGGTTCAGTTTCATCAGGAATACTAATTTATATGGCCTTGGTTGATCTTATAGCAGTTGACTTTTTTCACAACAAGCTTATGAACTCTACTCCTCGGTTGAAGAAAATATCTTTTATTGCTTTGACTCTTGGTTCGGCTGCCATGTCTATCCTTGCCTTGTGGGCTTGA 978 0.5235 MASSACVTDLARTAACRDGSAAAHLKVVSIFVIFVTSVAGMSLPVLLAGIFRGKPLYDKAIVVIKCFAAGVILSTSLVHVLPDAYAALADCQVASRHPWKDFPFAGLVTLVGALLALLVDLAASSHVEHAQYAPVVAQEKELELGGGCRGSGGDGERGEELVKLKQRLVSQVLEIGIIFHSVIIGVTMGMSQNVCTIQPLVAALAFHQIFEGMGLGGCVAQAGFSFGTTAYMCLMFAVTTPMGIILGMTLFSLTGYDDSNPNALILEGLLGSVSSGILIYMALVDLIAVDFFHNKLMNSTPRLKKISFIALTLGSAAMSILALWA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1105 325 Pfam ZIP Zinc transporter 24 129 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vra6g1105 325 Pfam ZIP Zinc transporter 157 322 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vra6g1105 325 PANTHER ZINC TRANSPORTER 6, CHLOROPLASTIC 5 325 - -
Vra6g1105 325 PANTHER ZINC/IRON TRANSPORTER 5 325 - -
Vra6g1105 325 TIGRFAM zip: ZIP zinc/iron transport family 13 325 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1105 Vra-Chr6 17240514 17242864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1105 1 325 Inorganic Solute Cotransporters AT2G30080 68.622 1.19e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1105 K14709 - gmx:100797310 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1105 6 17240514 17242864 Vra6g1105 6 17240514 17242864 ECH
Vra6g1105 6 17240514 17242864 Vra10g0426 10 9830948 9832511 ECH