Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1103 ATGCCGACTCAATCCGAGTCACCCAGTAACTCACTCAGTCAACTCGCTCAAAACGTCTTCTCCGACAACAACAACAGCAGCATCATGCTCGCAGCCGTTCTTTCCTTGCTCCTAGTCATCCTCTTTGTCCTCCTACTCCACTTGTATGCCAAGTGGTTCTTATCTCAGTCGCAATTACGTTCTCGCACTCGCCGGTGGCGAACTCCGGTGACTGTCTCCGACGTTCTGGAACCTTCCCATTTCCACAGCATCAACATAGAAGCTTCAACCACCTGCCCCAAGGGCCTGGATTCAGCGACAGTTTCAGCAATTCCCATGTTTGTGCACAAAACAGAGAAAACAGAGGAATTGGAATGTGTGATCTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGATTGCCAAAGTGTGGCCATGCTTTTCATGTTGAGTGCATTGACATGTGGTTTACTTCACATTCCAATTGTCCCATTTGCAGAGCTCCTATTCTGGGAAGCGATGATTCTCAACCGGGTTCTGATGACGTCTTTGAGATTGTGGTTGTAACTCCTGGTTATGAGATTAGTCAGAGTGAAATCGGTTCGATGAGTGGTTCTGTTCCAGACAATTCTTCTTCTTTGTTAGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGACCATGTAACTGAGTTGAATGCTTCACAATGA 705 0.4638 MPTQSESPSNSLSQLAQNVFSDNNNSSIMLAAVLSLLLVILFVLLLHLYAKWFLSQSQLRSRTRRWRTPVTVSDVLEPSHFHSINIEASTTCPKGLDSATVSAIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHAFHVECIDMWFTSHSNCPICRAPILGSDDSQPGSDDVFEIVVVTPGYEISQSEIGSMSGSVPDNSSSLLGFSLKRLLSKVFLSPDHVTELNASQ* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1103 234 PANTHER - 1 229 - -
Vra6g1103 234 SUPERFAMILY RING/U-box 106 169 - -
Vra6g1103 234 SMART ring_2 119 160 IPR001841 -
Vra6g1103 234 SMART FANCL_C_2 115 168 - -
Vra6g1103 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 169 IPR013083 -
Vra6g1103 234 CDD RING-H2_EL5_like 118 161 - -
Vra6g1103 234 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 229 IPR044675 -
Vra6g1103 234 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vra6g1103 234 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1103 Vra-Chr6 17189751 17191051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1103 28 162 Rapid Response to Elicitors AT3G16720 41.304 3.76e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1103 - - gmx:100777829 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1103 6 17189751 17191051 Vra6g1103 6 17189751 17191051 ECH