Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1100 ATGAACCCATCTGAAGAATTTGTGGAACATGGAATGTCTCAGCAGAATTTAAAGAGAACGTCCTGTGCAACTGTGCTCACTCTGGCTTACCAAAGTCTTGGCATAGTTTATGGTGACCTCAGTACTTCTCCTCTTTATGTTTACAAGACCACATTTTCAGGGAAATTAAAACTCAAAGAAAATGATGAGGAGATTTTTGGCGTGCTTTCGTTTATCATCTGGACATTTACCATCACTGCTCTCTTCAAATATGTTTTCATTGTGATGTCTGCTGATGACAATGGGGAAGGAGGAACTTTTGCATTATACTCACTTCTCTGCCGGCATGCAAGACTAAGCATTTTACCTAATCAGCAAGCCACGGATGAGAAATTATCTGCTTATACCACACAAGATTCTGAAGACACATGGCTTTCTTCTCATTTGAAGTTGTTCATTGAAAAGCACCCAAGGTTCCAAAAAGGACTGTTGATCTTTGTTCTTCTAGGAACCTGTATGACAATTGGTGATGGTGTGATTACACCTGCAATATCAGTTTTTTCAGCAGTTTCGGGAGTTCAAGTTAAGATCAAAGAACTCCATGACAATTATGTTGTCATAATCTCATGTGTCATTTTGGTGGTCCTTTTCTCCATTCAACATCATGGAACACATAGAGTTGCTTTCATGTTTGCCCCAGTAGTAGCTGCATGGCTTTTGTGTATAAGTGGTATTGGTATCTACAACATATTCCACTGGAACCGGCAAATATACCGTGCACTTTCTCCATTCTACATGTTGAAGTTCCTCAAAACCACTGGTATTGAAGGTTGGATGTCATTAGGTGGAGTTGTGCTTTCAATCACAGGAGTGGAGGCAATGTATGCTGCTTTGGGTCATTTTTCTGCACTCTCAATAAAGGTAGCTTTCACATGTCTAGTGTATCCCAGCCTGATTTTTGCATACATGGGAGAGGCTGCATTTCTCTCTAAGCATCATCATGCTATTCAGGGCAGCTTCTACAAAGCCATACCAGAAACTGTATTTTGGCCAGTTTTCGTAGTTGCCACTTTCGCAGCCATTGTTGGTAGCCAAGCAGTGATTTCTGCCACCTTTTCCATCGTAAGCCAGTGTTGCGCATTGAATTGTTTTCCTCCGGTTAAGATTGTTCATACTTCAAGCAGAATATATGGACAGATTTATGTCCCAGAAGTGAATTGGATACTGATGTGTCTTTGTTTAGCTGTCACAATTGGCCTTAGGGATATAGACATGATGGGTCATGCATATGGACTGGCTATAACCACTGTAATGTTTGTGACAACATGCTTGATGACACTAGTAATGGTCATTGTTTGGAAGCAGGGAATAATAAAAGCCATTATGTTTTTGGTACTGTTTGGATCAATTGAACTGCTTTACATATCAGCTTCTTACTGCAAAGTCCCTGAAGGAGGATGGATCCCCCTTGTGCTATCTTTTGCTTTTATGAGTATAATGTTCACTTGGAACTATGGAACAATGAAGAAACATGAATTTGATGTGGAGAACAAGGTTTCAATGAGCAAGATACTGTCCTTGGGACCATGCTTAGGAATGGTCCGTGTCCCAGGAATAGGAATCATTTTCAGTAATCTGGCTTCAGGTGTCCCTGCTATTTTTGGTCACTTTGTCACAAACTTGCCAGCATTCCATCAGGTGTTAGTTTTTGTTTGTGTCAAATCAGTTCAAGTTCCTTGTGTCAGTGACAATGAACGGTTGGTGATAAGCAGGATTGGCCCAAAGGAGTACCGAATGTTTTGTTGCATTGTCAGGTATGGTTACAAGGATCTGCAACAAGAGAACTACAATTTTGAGAATAAATTGGTAAGTGCAATAATCCAGTTTGTAGAAATAGAGGAGAGTGATCCTGCACCAACCCCAGAAGAATTGTGTATGGATGGTGGAAACTTAAGTATGGCACACCTTGCCGTTTCACCATACACTTTGAATGATTCATGTTACATAGAGAAAAGCTTCCCATTTTCATGTGTTTTACGTGTGAAGAAGAATGAAAATGATCATCTTCAAGAGTCTCCCTATAAAGATGAATCTATGCAGATTTTAAGAGCCAAGGAGTCTGGTGTTACCTATATACTTGGTCATTCCTATGCAGAGGCAAAGAAATCATCCTCTATTCTAAAGAAATTTGCCATAGATGTTGTTTATGCTTTTCTAAGCAAAAATTGCAGAGATCCTGATGTTTACTTGAACGTAGCACATACTTCTCTGCTAGAAGTTGGTATGGTTTACCATGTCTAA 2280 0.3991 MNPSEEFVEHGMSQQNLKRTSCATVLTLAYQSLGIVYGDLSTSPLYVYKTTFSGKLKLKENDEEIFGVLSFIIWTFTITALFKYVFIVMSADDNGEGGTFALYSLLCRHARLSILPNQQATDEKLSAYTTQDSEDTWLSSHLKLFIEKHPRFQKGLLIFVLLGTCMTIGDGVITPAISVFSAVSGVQVKIKELHDNYVVIISCVILVVLFSIQHHGTHRVAFMFAPVVAAWLLCISGIGIYNIFHWNRQIYRALSPFYMLKFLKTTGIEGWMSLGGVVLSITGVEAMYAALGHFSALSIKVAFTCLVYPSLIFAYMGEAAFLSKHHHAIQGSFYKAIPETVFWPVFVVATFAAIVGSQAVISATFSIVSQCCALNCFPPVKIVHTSSRIYGQIYVPEVNWILMCLCLAVTIGLRDIDMMGHAYGLAITTVMFVTTCLMTLVMVIVWKQGIIKAIMFLVLFGSIELLYISASYCKVPEGGWIPLVLSFAFMSIMFTWNYGTMKKHEFDVENKVSMSKILSLGPCLGMVRVPGIGIIFSNLASGVPAIFGHFVTNLPAFHQVLVFVCVKSVQVPCVSDNERLVISRIGPKEYRMFCCIVRYGYKDLQQENYNFENKLVSAIIQFVEIEESDPAPTPEELCMDGGNLSMAHLAVSPYTLNDSCYIEKSFPFSCVLRVKKNENDHLQESPYKDESMQILRAKESGVTYILGHSYAEAKKSSSILKKFAIDVVYAFLSKNCRDPDVYLNVAHTSLLEVGMVYHV* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1100 759 Pfam K+ potassium transporter 30 603 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vra6g1100 759 PANTHER POTASSIUM TRANSPORTER 688 759 - -
Vra6g1100 759 PANTHER POTASSIUM TRANSPORTER 15 638 - -
Vra6g1100 759 TIGRFAM kup: potassium uptake protein 28 759 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vra6g1100 759 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 688 759 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vra6g1100 759 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 638 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1100 Vra-Chr6 17151136 17156472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1100 122 759 Inorganic Solute Cotransporters AT2G30070 65.674 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1100 K03549 - gmx:100798458 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1100 6 17151136 17156472 Vra6g1100 6 17151136 17156472 ECH