Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1099 ATGACTTCGTGGGTGAGAGGCAGGTGCGTCGGGAAGGGCGCGTTTGGAGTTGTCAACGCCGCGGTTTCCAGACCTCATGGTCGGCTATTCGCGGTGAAGTCCGTGGACTGTGGATTGGGGCACCCTTGTCGGCTCCAGGCGTTGGAGAACGAGATTCGGATTCTGAAACGCGTGGCGTCGCCACACGTGGTGGCTTATCTGGGCGACGACGTCACGTTTGAGCACGGCGGAACGGTGTCCTTCAGGAACCTTCATCTCGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCCCGCTGACGTGGACGAGAGTTTGGTCAGGCGCTACGCGTGGTGCCTCGTGAGCGCACTGCGTGACGTCCACGCGCGCGGCTTCGTGCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCTCCGGCAACCGTGCGGCCGCGAAACTCGCCGACTTCGGCTCGGCAGTGGAAGTCGAAGTCCCGCAGGATTTGTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTAGTGCGCCGGGAGCGGCAGGGGCCGGAGTCAGATGTGTGGTCGCTGGGTTGCACGGTGATCGAGATTGTCAACGGGAAACCGCCGTGGGAGGATCACGGTGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAGTTTCCAAGCAAGCTGTCAGAGCTAGGGAAGGATTTTCTAGAGAAGTGTCTGAGAAGAGAATGGAGAGAGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCTTACGCCGTAGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCGGAGTCAGAACATAACGACCTTGAAGAAGGAGGGTGGTTAGAATTTAACCGTACGGAAAATTCAGTTAAAAGTAGAATTAGTAAATTAGCAACAGAATGGAGGGTAAATTGGGAAACAGAGGGTTGGGAAGCGGTGAGGGAAGTTGAGCTGAATGAAGAATCATGGTCATCAAGAACATTAAGTGAAACCGAAGAAGGGGTTAATTGGGAATTTAGCAATGCGGTGGGAGTAGGGAGTTGTGGGGAATGTTGGCATTGTGAAGGGGTAAATCAGGAAATAAAAGAGTTTGGTGGAGGTTGGGAAAGGGGAATTTTGAGAATTTACAGTTGTAAAAGTTTGATACGATGTTATTTGTTGTTGTTAATATATTTAAATAGATTATGGTTTTGGATTATTTATGGTGTTTGCATGTGTTTATTGGAAAAGTGTGTAATGCAATTGGGTGGAATGTATGAGAAATTGATGATTAGGTTTGGTGGTGTGAACTGTGAAGAGGGGAATGATGGTTACAGTTGGACACATGATGGAAATGATATAGGAGATCTGAACTGA 1395 0.5197 MTSWVRGRCVGKGAFGVVNAAVSRPHGRLFAVKSVDCGLGHPCRLQALENEIRILKRVASPHVVAYLGDDVTFEHGGTVSFRNLHLEYMPGGTVADLDPADVDESLVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLSGNRAAAKLADFGSAVEVEVPQDLLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIVNGKPPWEDHGVDTLSRIGYSDELPEFPSKLSELGKDFLEKCLRREWRERWSCDQLLQHPFLLPYAVVESSPRCVLDWVDSEFAESEHNDLEEGGWLEFNRTENSVKSRISKLATEWRVNWETEGWEAVREVELNEESWSSRTLSETEEGVNWEFSNAVGVGSCGECWHCEGVNQEIKEFGGGWERGILRIYSCKSLIRCYLLLLIYLNRLWFWIIYGVCMCLLEKCVMQLGGMYEKLMIRFGGVNCEEGNDGYSWTHDGNDIGDLN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1099 464 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1099 464 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1099 464 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 357 - -
Vra6g1099 464 CDD STKc_MAPKKK 3 259 - -
Vra6g1099 464 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra6g1099 464 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 357 - -
Vra6g1099 464 Gene3D Transferase(Phosphotransferase) domain 1 2 326 - -
Vra6g1099 464 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Vra6g1099 464 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1099 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1099 Vra-Chr6 17112060 17113894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1099 4 360 MAP Kinase Kinase Kinase AT1G07150 53.804 4.48e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra6g1099 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1099 - - vun:114193591 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1099 6 17112060 17113894 Vra6g1099 6 17112060 17113894 ECH