Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1098 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTCTTCTCTCCCTCCTCTTCTCTCTTCTGCTCTAAGCCTTCCATCATCTCTTCTTCGCCCGAATCTCTTTCGCTCTCTCTCTCCCACCTCAAACCTTCCAACACTAACACCGCCTCCTCCTCTTCTTCTCCTTCTGCTGCGGCTGCTTCCTCCTCTCCTTCTTCCCCTTTTCGCCTTCGCCTTCCCAAGCCTCCCTCTGTCTTCTCTACCTCTTCTGCTTCCTCCACCTCCCCCAACGGCACCGTTTTGAAGAGGAAGCGACCCGCCAGGCTCGACATACCCGTTTCCTCTCTCACCTTCGGGGTTCCGCCCACGCCCTCCGCTGCGGCGCGTGACGTCGTCGAGGCGGAGGAGGATGGCTTTGGGGTCTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGAATAATCTACGCGGTGAAAACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCCAAGGCTGCTGAATATGCTGCAAATAACTTAGAGAAGAATATTTTAGATGAAGTGATTATGAGAGATGAAGATGATGCCGAGGAGGCAGTGAAGCGTGGGTACCTCAACACAGACTCAGATTTCTTGAAGGAGGAACTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAACGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAAGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTACGTGGATTTATGCCGCGGTATTTGGAGGATCCAAGGATCTCTTGCTGTGTCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGACTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTTCTTTTCTCGTGGGGAGCAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACGAGCGTTATGCTAATCAAATTAGAACACTATGTTTAA 1161 0.503 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNTNTASSSSSPSAAAASSSPSSPFRLRLPKPPSVFSTSSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPPTPSAAARDVVEAEEDGFGVYCKRGRREYMEDRYTAGNNLRGENKLAFFGIFDGHGGAKAAEYAANNLEKNILDEVIMRDEDDAEEAVKRGYLNTDSDFLKEELHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGIWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLVGSNKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1098 386 CDD PP2Cc 131 382 IPR001932 -
Vra6g1098 386 MobiDBLite consensus disorder prediction 36 99 - -
Vra6g1098 386 MobiDBLite consensus disorder prediction 36 68 - -
Vra6g1098 386 SMART PP2C_4 121 380 IPR001932 -
Vra6g1098 386 Gene3D - 122 385 IPR036457 -
Vra6g1098 386 MobiDBLite consensus disorder prediction 76 93 - -
Vra6g1098 386 SUPERFAMILY PP2C-like 132 383 IPR036457 -
Vra6g1098 386 Pfam Protein phosphatase 2C 132 374 IPR001932 -
Vra6g1098 386 ProSiteProfiles PPM-type phosphatase domain profile. 131 382 IPR001932 -
Vra6g1098 386 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 385 - -
Vra6g1098 386 PANTHER PROTEIN PHOSPHATASE 2C 3 385 IPR015655 GO:0004722|GO:0006470
Vra6g1098 386 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1098 Vra-Chr6 17093217 17095662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1098 1 386 PP2C-type Phosphatase Gene Family AT2G30020 63.682 1.55e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1098 K17506 - gmx:100797934 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1098 6 17093217 17095662 Vra6g1098 6 17093217 17095662 ECH
Vra6g1098 6 17093217 17095662 Vra10g0417 10 9727626 9730077 ECH