Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1092 ATGTCTCACAATCATTCTCCAATGGATGTCGATGGTGAGAAGTGTTACGAGAGCACCAATCGTAAAAGAGGGTCCAGGAAAAGAAAGCTTCTTGTCAACGAGAGAGTCGAGATAAAAAGCGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAAGCAGAAGCGTTATGTCAGATATGACAATATTCTAGATGATGATGAATCAAAATACCTTGTGGATGTGGTGTGTGTTTCATCTGTTTTGGATGGTCATAGTTCTTCTGATTTTAGCAATGAAAATGGATTCATCAGACCTTTGCCTCCTCCGTTTGAGTTTGGGGAGATTGACCTTCCGTTTGGTCTTTGTGTTGATGTAAATTATCAAGAAGGCTGGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGGGGAGAGGAGCGTGCTCTTCCCAGATTTGGGTGATGAAATGAAGGTAGGAACTCATCAGTTGCGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGTGAAAAGGAATCCTTTGTGGCAGTTTCAGTGAAGCAAATATGGTATGATATAAGGACCAGAAAGGATTTTGACAATATAAAACATTGGACTTGTAAGGATAAGGACTTGTGGAGAGCCCTTGTAGTGGAAGTGGTTGGTGGCTACTATGTTCTCACACTGGAAGAAGTTTTGCCAGCTTTAAACCTTCCTGAGGAATTCTTGAAAGAAACACCAGAAATGAACTCAGTTGAACCTACTGACAACTTTCATTGTGATTCTGCACACACTAATATATTTGGTTCTGACATTGGAGTTTCAGATTGCCCTATGGAAAAAAGTGGTAACATCATTTGCTTTCAAGAGGAATGCGATAGAGATCCTTTGATGGATGGGGCATCAGAGAAGAAAATTATTTTACAGGAGGAACCTGTATCTCCTATTCAGGAGATCATGATTGGTGCCGGTGAAATAAAGCAGGCTGCTACCTGTTGTTCAAAGAAGAGAAAACTCAGAAGGTCAGTGTCCATTAGTTGGAAACCTGTGGTACCGAGCAAGGTTGAATTCTGTCCTGATGTTGTTAACCAGTATTTACTTGGACGTGGTAGCAAGACCATTAGGGAACTTTTGAAGACTAAAGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGAGAGATAGTAGACATTATCCTGGACGTGGACGTGGATTCTACAGGTACAAGTCACCTGATGCACAGGACGAGAAGTTTTACGCTTCAATTGTTCAAGTATTGACACACATTCAATTGGAGTCCAACGTGAACACTGTGCATCCCCAAGTTGACCACAGTAGGATGGGTTCTGCAAATGACTCTGATATTTCACTTTTGCTTTCAGACCAACCCCCAAATGACCAGGATCTAGATGTTTGTCCTCCAGAGGAAAGTGTTGGGCATGTTAATAGTGATGATCTATCGCAAACCTTGTCCCATTTTCTTCGAAAAGAGCCTGAAGTGCATACTGCTTCACCAGCAAGTGTATCAACTGAGAGTAGAAAACATAAACACACCAGGAATTCAAAGGCCATCATGCCAAAGGGCGACATGAAAGGGTCACGTACAGAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCCCCAAGTCTGTCACACCAACGACCTCAAAATGTTGTGTCTTGGTTAATGGGTAGGGGGGTGCTGATGCCAAGATGTAAGGTCTATTACTGGGCAGAAGGAGGCAGTAACACTGATTCAGCTCAGGGGAGGATAACTTATGATGGGATTAAGTGTAGCTGTTGCCAGAAAATATATGGTATTCGGGGCTTTGTAAATCATGCTGGTGGAAGTGGTGACTGCAGGCCTTCTGCCAGCATATTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATAATTAAAGAAATGCACGATGATAGAACAAGGGAAGATATGAACAGACCATGCAATGATCTGTTGAGAGGAGAGAATGACGACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATATTATGCGACCGATGTCCATCCGCATTTCATAAGACATGTCTTGGTTTGAATGATATCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGAGTCTGAGAATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGTTGGATGCTTGAAAAATAGAGAAAAGGATGACTCAAGAAGATATATGGAAAATTGGTTCTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTACAAAGTCTATTAGGAAAGCCACTTATTGTGGGTCCGAACAATCTAACTTGGACATTGGAGAAGTTTAACAACTCTGAGAGTTCTGATGTTGGCAGTTCTCTGAATGACTCATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGGGTGTTTTGATCCCCTAAAGAACCCTTTCACTGGTAGAGATATCATTGATGATGTTATATTCAACTCCAGGTCTGAGCTCAATCGATTGAATTTCCAGGGTTTCTACAGTGTACTTCTGGAGCAAAATGAAGAATTGATCAGTGTAGCAACTATTAGGGTGTTTGGAAAGAAAGTAGCTGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGCCTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAGAAGAACCTGGTGCATCTGGGAGTGGAGAGATTAGTCTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGTCAAATTTTGACAGGTCACAGTTCTTGGACTGTGCTTTCCTAGATTTTCAGGAAACTATCATGTGCCAGAAGTTTCTGACAAGGATTCCATCTCCCCAGTCAGGTGTAACAAGAGAAACAGAACGAAAAGCAAACGATGTTTTTACTCTCAGATATAGAAATGAGTTTGACAAGTCCAGTTCAGCATCAGAAGTAGACCAAGCTGAAGAGATAGAGAGAAGTAGGATGGATGAACAAGTTCTGGACTTTGTTTCTACTCTTCCAACTTCATCATAA 3144 0.4214 MSHNHSPMDVDGEKCYESTNRKRGSRKRKLLVNERVEIKSVEEGFLGSWHPGTVVRCEKQKRYVRYDNILDDDESKYLVDVVCVSSVLDGHSSSDFSNENGFIRPLPPPFEFGEIDLPFGLCVDVNYQEGWWEGVIFDHCNGMGERSVLFPDLGDEMKVGTHQLRITQDWDEATENWEPRGKWVFLEVVQECEKESFVAVSVKQIWYDIRTRKDFDNIKHWTCKDKDLWRALVVEVVGGYYVLTLEEVLPALNLPEEFLKETPEMNSVEPTDNFHCDSAHTNIFGSDIGVSDCPMEKSGNIICFQEECDRDPLMDGASEKKIILQEEPVSPIQEIMIGAGEIKQAATCCSKKRKLRRSVSISWKPVVPSKVEFCPDVVNQYLLGRGSKTIRELLKTKVWKHLAYLGWKIEWRDSRHYPGRGRGFYRYKSPDAQDEKFYASIVQVLTHIQLESNVNTVHPQVDHSRMGSANDSDISLLLSDQPPNDQDLDVCPPEESVGHVNSDDLSQTLSHFLRKEPEVHTASPASVSTESRKHKHTRNSKAIMPKGDMKGSRTECLRSSKRVLSAPSLSHQRPQNVVSWLMGRGVLMPRCKVYYWAEGGSNTDSAQGRITYDGIKCSCCQKIYGIRGFVNHAGGSGDCRPSASIFLKDGRSLLDCIIKEMHDDRTREDMNRPCNDLLRGENDDICSVCQYGGELILCDRCPSAFHKTCLGLNDIPHGDWFCPSCCCAICSQIKTEESENVLFLTCIQCEHKYHVGCLKNREKDDSRRYMENWFCGKECEQIYAGLQSLLGKPLIVGPNNLTWTLEKFNNSESSDVGSSLNDSLAEKYSKLSVALSVMHGCFDPLKNPFTGRDIIDDVIFNSRSELNRLNFQGFYSVLLEQNEELISVATIRVFGKKVAEVPLVGTRIQYRRLGMCRILMNELEKNLVHLGVERLVLPAVPAVLETWTKSFGFAQMSNFDRSQFLDCAFLDFQETIMCQKFLTRIPSPQSGVTRETERKANDVFTLRYRNEFDKSSSASEVDQAEEIERSRMDEQVLDFVSTLPTSS* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1092 1047 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 819 976 IPR000182 GO:0016407
Vra6g1092 1047 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1092 1047 Pfam Tify domain binding domain 608 658 IPR032308 -
Vra6g1092 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 727 IPR013083 -
Vra6g1092 1047 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 873 960 IPR016181 -
Vra6g1092 1047 ProSiteProfiles Zinc finger PHD-type profile. 683 728 IPR019787 -
Vra6g1092 1047 CDD NAT_SF 876 937 - -
Vra6g1092 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 782 IPR013083 -
Vra6g1092 1047 PANTHER PHD ZINC FINGER PROTEIN 507 1038 - -
Vra6g1092 1047 PANTHER PHD ZINC FINGER PROTEIN 4 496 - -
Vra6g1092 1047 SMART ring_2 727 782 IPR001841 -
Vra6g1092 1047 SMART ring_2 686 725 IPR001841 -
Vra6g1092 1047 SMART agenet_At_2 115 172 IPR014002 -
Vra6g1092 1047 SMART agenet_At_2 28 96 IPR014002 -
Vra6g1092 1047 MobiDBLite consensus disorder prediction 1 21 - -
Vra6g1092 1047 Gene3D - 856 966 - -
Vra6g1092 1047 SUPERFAMILY FYVE/PHD zinc finger 665 725 IPR011011 -
Vra6g1092 1047 SMART PHD_3 685 726 IPR001965 -
Vra6g1092 1047 SMART PHD_3 727 779 IPR001965 -
Vra6g1092 1047 Pfam PHD-finger 685 725 IPR019787 -
Vra6g1092 1047 MobiDBLite consensus disorder prediction 517 554 - -
Vra6g1092 1047 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 507 1038 - -
Vra6g1092 1047 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 496 - -
Vra6g1092 1047 Pfam Agenet domain 34 108 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1092 Vra-Chr6 16979827 16985808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1092 30 925 PHD Transcription Factor Family AT5G58610 36.439 3.09e-176 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra6g1092 Agenet 4.4e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1092 - - vra:106763506 2160.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1092 6 16979827 16985808 Vra6g1092 6 16979827 16985808 ECH