Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1085 ATGTGGTGCAGGTATCCGGATACACTGTTGCTGTATCCGGATACAGCCATGGGAGGTTCCGGTAGCAGTCACCGGTTGGGGAGAGCTTCGTTGGTTGGGAAGTACCTTGAGGTTTTGGCCAAGGAGAAGACATCCGATGCAATTGCTAAGCTCATGAACTTGACACCTGACACTGCTATATTATTGACGTTGGATAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTTATTAAGATCATTCCCGGTGCAAAAGTGGCTTCCGATGGATTGGTCATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCNTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATGAAAATGGAGTGGCATGCACGAGACAATTATAA 435 0.4644 MWCRYPDTLLLYPDTAMGGSGSSHRLGRASLVGKYLEVLAKEKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGLVIWGQSHVNESMITGEARXVAKRKGDTVIGGTVNENGVACTRQL* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1085 144 Gene3D - 40 142 - -
Vra6g1085 144 SUPERFAMILY Calcium ATPase, transduction domain A 73 140 IPR008250 -
Vra6g1085 144 PANTHER ATP7, ISOFORM B 30 139 - -
Vra6g1085 144 Pfam E1-E2 ATPase 72 139 - -
Vra6g1085 144 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 30 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1085 Vra-Chr6 16825502 16826616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1085 31 138 Primary Pumps ATPases AT1G63440 87.037 6.54e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1085 K17686 - vra:111241794 284.263