Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1083 ATGTGCTGTGTTTCCAAGGGGAAACCTCAAATTGGTCTAGTGATGGAGGACGAGTGTGTAAAAGAAGAGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGACGCTGTTGAAAAGGAGGGTCAGGATGTTGATGGGGTGGGGCTGTGGTATGGAAGGCGTGCTGGCTCAAAGAAAATAGGTTATGAAGAGAGGACTCCTCTCATGGTTGCTGCTACGTTTGGAAGCCTTGATGTGTCTGCTTATATTCTTGGAACGGGTGGTGTTGACGTTAACAGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGAGGTTAATGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCTATCTTCAGTCCAAGGGCCAGGGTGCTAGCGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGCTGCTGATCAGACATATTTCTCACTTCCTCAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAATGACCACATCTCGTGTTTCAAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACTGAATGCCCCTTTGTTCATCCAGGGGAGAACGCTAGGCGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACAAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATGGGTTCAATTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATACCAACTTCCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTATTACTGGTTCCATTTGGTCTCAATCTAATGTTGCAGTCCCCACCCTGCTGCTGCCCAAAAGCAGATTGAAGACTGCTTCAACTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTGATGATGGATGACATGTCTGGTCTTTCCTCTCCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCCTGTTTCTATGAGTGATCACATTGGGGAGTTAAACAGGCTTTCAGGGGTGAAGCCATCAAACCTTGATGATACCTTTGGATCTCTTGAACAATCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCAAATATGAACCAGCAGCTGGGGGGCTATTCCTCGGGCCTTTCCACCTCAAACATGGTTGGATCAAGATCCTTCAGGGTTGATCCATCTGCTGAAGGAGCCTCGGTGGTTTTGAATCCAAGAGCTGCTGCTTTTGCTAAGCGTAGCCATAGCTTTATCGAGCGAAGCATGGTGAACCATCATTCTGAGCTTCCTTCTCCAAAGGTCTCTACTTTCTCTCACTGGGGCTCACCTGATGGAAAACTGGATTGGACCATGAATGGAGATGAGCTGAATAAGCTGAGGAAATCTTCTTCCTTTGGGTTTCGAAGCAGCAACAGTCCTCTTACAAAGGATTCAACCACAATGCCTGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCTCTCGTTAAGGATGCTCCACCAGAAGCTGGAGTCGAAGATCAGCGAAAACAATGCCATAATGGAACAGAAGCAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCATGA 2070 0.4676 MCCVSKGKPQIGLVMEDECVKEEMHHRISALLEFSAADDLIGFKDAVEKEGQDVDGVGLWYGRRAGSKKIGYEERTPLMVAATFGSLDVSAYILGTGGVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASAEVNAVDADGNRPIDLIVSVANSIFSPRARVLAALLEGTCDAAAADQTYFSLPQVIDQIEEQRQEMTTSRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSAGASALEMGSISPIALGSPSVLIPTSSTPPLTPSGASSPITGSIWSQSNVAVPTLLLPKSRLKTASTARDIDLDFELLGLEAHRRRQQLMMDDMSGLSSPNWKNSMPNSPSFPVSMSDHIGELNRLSGVKPSNLDDTFGSLEQSILSKFHGISLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSTSNMVGSRSFRVDPSAEGASVVLNPRAAAFAKRSHSFIERSMVNHHSELPSPKVSTFSHWGSPDGKLDWTMNGDELNKLRKSSSFGFRSSNSPLTKDSTTMPANVDDEPDVSWVNSLVKDAPPEAGVEDQRKQCHNGTEAIPAWLEQMYLDQEQMVA* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1083 689 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Vra6g1083 689 MobiDBLite consensus disorder prediction 619 640 - -
Vra6g1083 689 Gene3D - 21 112 IPR036770 -
Vra6g1083 689 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Vra6g1083 689 Pfam Ankyrin repeats (3 copies) 69 142 IPR002110 GO:0005515
Vra6g1083 689 PANTHER UNKEMPT FAMILY MEMBER 19 688 IPR045234 -
Vra6g1083 689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 688 - -
Vra6g1083 689 SMART ANK_2a 73 103 IPR002110 GO:0005515
Vra6g1083 689 SMART ANK_2a 108 140 IPR002110 GO:0005515
Vra6g1083 689 Gene3D - 269 331 - -
Vra6g1083 689 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Vra6g1083 689 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vra6g1083 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Vra6g1083 689 MobiDBLite consensus disorder prediction 619 634 - -
Vra6g1083 689 Gene3D - 113 171 IPR036770 -
Vra6g1083 689 SUPERFAMILY Ankyrin repeat 70 181 IPR036770 -
Vra6g1083 689 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1083 Vra-Chr6 16803104 16806253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1083 23 684 C2H2 Transcription Factor Family AT5G12850 38.950 2.14e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra6g1083 Ank_2 1e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1083 - - gmx:100795085 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1083 6 16803104 16806253 Vra6g1083 6 16803104 16806253 ECH