Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1076 ATGCACATGAGCACCTACTCGGAGGGCACCACATCAGGACCCATGGAAGATGAAGATTTGGAGAACAACAATGAGAAGACAGCAATGGTGAGAAAGAAGTCAGAAGTAGTTGTGGCGGTGGCAAGTAATAATGGTCGTTCAGAAATGCTTAGGAATTTGATGACGAATTTGCAAGCGGTGTTTCTTGGTACTAAGCTTGCTGTGCTTTTTCCAGCAGTTCCTTTGGCTGTTGTTGCAACCTTTTATGGCTTTGGAAGGCCTTGGATTTTCGCTTTCAGCCTCCTTGGACTGGCTCCACTAGCTGAACGTGTCAGCTTCCTGACTGAGCAAATTGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGAAATGCAACAGAGATGATCATAGCATTATTAGCACTTCATCAGAACAAAGTAAATGTTGTGAAGTTGTCCTTGCTTGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGAAGCTCACTCCTCTGTGGTGGTTTAGCCAATCTCAAGAGAGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGGTTCTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTGCTGTTCAGATACTCCTTAGGAGGGGCCCATCATTCCATAGCCACTAACACTCTTCAGTTGTCCAGAGCAAGCAGTGTTGTTATGCTTCTAGCATACCTTGCTTACATCTTCTTCCAGTTAAAAACTCACAGAAAATTGTTTGATTCACAAGAGGAGGAGGAAGACGAAGAGAAGGCAGTGATAGGATTTTGGAGTGCATTTACGTGGTTGGTGGGTATGACATTGGTCATATCTTTGCTTTCTGAATATGTAGTAGGAACAATCGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTAAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGAAATGCTGCAGAACATGCTGGGTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGAGTGGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAAGAATGGATTTAGACTTCAGTCTTCTTGAAACTGGATGTCTTGCTTTTACAATTATAGTTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTACTCTGTGTTACATTGTGATTGCTGCATGTTTTTTTGTTCTGAAAACTCCTCTAACTGACCAAAATTCTATGGCGAACTGTGGAGCTAAACCATCGTTTGAAGCCATCAACACTTGA 1323 0.4225 MHMSTYSEGTTSGPMEDEDLENNNEKTAMVRKKSEVVVAVASNNGRSEMLRNLMTNLQAVFLGTKLAVLFPAVPLAVVATFYGFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLLFRYSLGGAHHSIATNTLQLSRASSVVMLLAYLAYIFFQLKTHRKLFDSQEEEEDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLTLCYIVIAACFFVLKTPLTDQNSMANCGAKPSFEAINT* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1076 440 Pfam Sodium/calcium exchanger protein 271 412 IPR004837 GO:0016021|GO:0055085
Vra6g1076 440 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016021|GO:0055085
Vra6g1076 440 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1076 440 PANTHER VACUOLAR CATION/PROTON EXCHANGER 18 427 - -
Vra6g1076 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 427 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vra6g1076 440 Gene3D - 117 265 IPR044880 -
Vra6g1076 440 Gene3D - 266 415 IPR044880 -
Vra6g1076 440 TIGRFAM caca2: calcium/proton exchanger 52 414 - -
Vra6g1076 440 TIGRFAM cax: calcium/proton exchanger 71 414 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1076 Vra-Chr6 16553781 16557670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1076 23 422 Antiporters AT2G38170 66.504 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1076 K07300 - gmx:100802344 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1076 6 16553781 16557670 Vra6g1076 6 16553781 16557670 ECH