Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1072 ATGGCGGCTTCCGATGGAAGCGAATACTTCGAATTAGGATCACTCCATAGCGAGAGCTTCGCTATGGCCTCCAACTCCGAGACCGTGGCCGAGGATGAAGAGGAGCTGCAGTGGGCGGCGCTCTCCAGGTTGCCGTCGCAGAAGCGCATCAACTACGCACTCCTTCGCGCATCTTCTTCCCGTGCTCAACTTCCTACGCAAGACTTAGTTGACGTCCGAAAGCTGAGCCGCTCTCGCCGGGAACTCGTCGTTAAGAAAGCTCTTGCCACCACCGACCAAGACAACTACCGCCTTCTCTGCGCCATAAAAGAACGCTTCGACAGGGTTGGGTTGGAGGTGCCGAAGATCGAGGTGAGATTCAGGAACCTCAACGTCTCTGCCAATGTTCAAATCGGTTCTAGAGCTCTACCAACACTCATTAACTATACTCGTGATTGCTTCGAGGGAATCCTAACCAAGATGAGGTTATGCAAACCTAAACGGCATTCCCTTACCATACTGAACAATATCAGTGGCGTTGTCAAGCCAGGAAGGATGACTCTGCTATTAGGACCTCCGGGAGCAGGTAAAACCAGCTTACTTCTGGCTCTCGCGGGCAAGCTTGACAACAACCTCAAGACAACGGGTAGTATAACATACAATGGCTGCGAGGTGGACGATTTTTATGTTCGACGGACTTCTGCATACATTAGCCAAACAGATGATCACGTTGCAGAACTGACGGTAAGAGAATGTTTGGATTTTGGTGCTAGATGTCAAGGTGCAGAAGAAGGTTTTGCAGCATATACAAGTGAACTTGGCCGCCTAGAGAAGGAAAGGAACATAAGACCTAGTGCAGAAGTTGACGCGTTTATGAAGGCATCATCTGTCGGAGGTAAGAAACACAGCGTGAATACGGATTACGTTTTGAAAGTGCTTGGTCTCGATGTATGTTCGGAGACAATAGTTGGCAACGATATGATGCGAGGGGTTTCTGGGGGCCAAAAGAAAAGAGTTACAACAGGAGAGATGATTGTTGGTCCAAGAAAAACACTATTTATGGATGAGATATCAACTGGTCTTGATAGCTCTACTACGTTCCAGATAGTAAAATGCATAAAGAACTTTGTTCATCAAATGGACGCTACAGTACTGATGGCTCTCCTTCAGCCAGCTCCTGAAACATTTGAGCTATTTGATGATCTGGTGCTTCTGTCAGAAGGGTACGTGGTATATCAAGGTCCTCGAGAAGACGTGCTCGACTTTTTTCAGTCATTAGGTTTTCAACTTCCACCTCGTAAGGGGATTGCTGACTTTCTACAGGAGGTGACATCTAAAAAGGATCAAGCACAATACTGGGCAGACCCTTCAAAACCATATGTGTTCGTCTCAGTTGCTGAAATTGCACAAGCCTTCAAAAATTCGAAATTTGGAAAGTATATGGAATCCTTGCAAAGTCATCCACTTGATACATCAAAAGGTCATCCTTCAGCTTTGGCTAGAACTAAATATGCCGTGCCAAGATGGGATCTTGCTAAAGCTTGTTTTTCTCGAGAACTCCTGCTCATAAGAAGGCATAGCTTTCTTTATGTCTTTAGAACCTGCCAGGTTGCTTTTGTTGGATTTGTCACATGTACAGTATTCCTACGAACAAGGTTACATCCCACAGACGAGGTTTACGGACGCCTTTATCTTTCTGCTCTATTTTTTGGGATGGTTCACATGATGTTCAATGGCTTTTCTGAGCTATCACTCTTGATAAGTCGGCTTCCAGTATTTTATAAACAAAGAGATAATTTGTTCTATCCTGCATGGGCGTGGTCTATAACCAGTTGGGTTCTACGTGTACCCTATTCCGTTATTGAGTCTGTTATATGGACTGTTGTTGTATATTACAGTGTTGGATTTGCTCCATCAGCAGGAAGGTTTTTTCGCTACATGCTTTTACTTTTTTTAATGCATCAAATGGCATTAGGTCTCTTCCGTATGATGGCAGCTGTTGCTCGAGATATGGTTCTTGCCAACACATATGGATCAGCTTCACTACTTATTGTATTCTTACTCGGAGGATTTATTATACCTAAAGCAATGATTAAACCGTGGTGGATTTGGGGCTACTGGTTGTCCCCCCTTACCTATGGACAACGTGCTATTACAGTTAATGAATTTACTGCTACAAGATGGATGAAGAAATCCGAGAATGGGGGGAGCACAGTTGGTTACAATGTCCTAGTCTCACAGAGCCTACCAACTGCTGACTACTGGTACTGGATTGGTATTTCAGTTGTACTTGTCTATTCGCTTTTTTTCAACAACATGGTCACTGTGGCCTTGACCTTTCTGAATCCCCCACGAAAAGCACGAACAGTTATTCCAAGTGACGATGACTCGGAAAAGAAATCTTCAAGAGACGGCAGTAATCATATCTATGAAATGAGTCCCCGCTCCAAATCAGCGAGAGAGGACAGTAATAAGAAAGGAATGATTCTTCCATTTCAACCACTGACAATGACATTCCATAATGTCAATTATTTTGTTGATATGCCAAAGGAGATAAGCAAGCAAGGAATACCTGAAACGCGGTTGCAGCTCTTGACAAACGTGAGCGGTGTTTTCTCACCCGGTGTACTTACAGCGTTAGTGGGCTCAAGTGGGGCTGGAAAGACCACTTTGATGGACGTACTGGCTGGTAGGAAAACTGGAGGCTACATAGAAGGGGAGATTAAAATTTCGGGTTACCCAAAAGAGCAACGAACATTTGCCAGAGTATCAGGATATGTTGAACAAAATGATATTCATTCTCCTCAACTAACAATTGAGGAGTCACTATTGTTTTCTTCAGCTCTTCGCCTTCCCAAGGAAGTTGGAGTTGCTAAAAGACTTGAGTTTGTTGAACAAGTGATGAAACTAGTTGAGCTTGATGCTTTGAGAAATGCTTTGGTTGGTATGCCAGGTAGTTCTGGCTTATCAACTGAGCAGAGAAAGCGATTAACAATAGCAGTGGAGCTTGTGGCAAACCCTTCCATTATTTTTATGGATGAGCCTACTTCTGGACTTGATGCACGTGCAGCAGCTATTGTTATGCGAGCTGTTCGAAATACTGTTGATACTGGTAGAACTGTAGTTTGCACCATACATCAACCAAGTATTGATATATTTGAAGCATTTGATGATTTACTTCTTATGAAACGTGGCGGACGAGTAATATATGGGGGAAAGCTGGGTGTTCAGTCACAGATAATGACAGATTACTTTCAGGGAATAAAAGGAATTCCCCCCATTCCGAATGGGTACAATCCGGCCACCTGGGTGCTTGAGGTTACCACGCCTGCTACTGAAGAGAAACTTAATATAGATTTTGCAGAAGTTTACAAGAATTCGGATCAATACAGGGGGGTGGAGTCTTCTATCTTGCAATTTGGACATCCTCCTGCAGGATCTGAACCACTGAAATTTGATTCTATCTATTCGCTAAATCTGTTTTCCCAATTTTTACGATGCCTATGGAAACAAAATCTTGTATACTGGAGAAGTCCATCGTATAATGCGATGAGGTTATACTTCACCACAATAAGTGCTCTGATATTTGGTACCGTATTTTGGGATGCTGGCTCAAAAAGGGAATCAACTCAAGAGCTGTTTGTGGTTATGGGAGCTATGTATTCTGCATGCATGTTTCTTGGGGTAAATAACTCTTCTTCTGTACAGCCAATTGTTTCAATAGAAAGGACTGTCTTCTATAGAGAAAAAGCTGCCGGTATGTACTCTCCAATAGCTTATGCTGCAGCCCAGGGGCTAATAGAGGTACCATACATCGCTGTTCAGACGATAGTATTCGGCATAGTCACATATTTCATGATCAATTTTGAAAGGACAGCAGCAAAGTTTTTTCTCTATCTGGTGTTCATGTTCCTAACGTTCACCTACTTCACCTTTTACGGCATGATGGCCGTTGGTCTTACACCTTCCCAGCATCTAGCAGCTGTTATTTCTTCAGCATTTTACTCCCTGTGGAATCTTCTCTCAGGTTTTCTCATCCCAAAATCGAGTATTCCCGTGTGGTGGATTTGGTTCTATTATATCTGCCCCATTGCATGGACGTTACGTGGTATTATAACGTCTCAGCTTGGTGATGTAGAAACCATTATAGTGGGACCTGGATTCCAGGGCACTGTGAAAGAGTATTTAGCTGTTACTCTTGGATATGACTCTAAAATCAACGGATTTTCAGCAGTGGGCCTTTCCGCCATTGTGCTTATTGGATTTATCATTATCTTCTTTGGTTCTTTCGCTATATCAGTCAAAGTCTTGAATTTCCAAAAGAGATAA 4308 0.4331 MAASDGSEYFELGSLHSESFAMASNSETVAEDEEELQWAALSRLPSQKRINYALLRASSSRAQLPTQDLVDVRKLSRSRRELVVKKALATTDQDNYRLLCAIKERFDRVGLEVPKIEVRFRNLNVSANVQIGSRALPTLINYTRDCFEGILTKMRLCKPKRHSLTILNNISGVVKPGRMTLLLGPPGAGKTSLLLALAGKLDNNLKTTGSITYNGCEVDDFYVRRTSAYISQTDDHVAELTVRECLDFGARCQGAEEGFAAYTSELGRLEKERNIRPSAEVDAFMKASSVGGKKHSVNTDYVLKVLGLDVCSETIVGNDMMRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCIKNFVHQMDATVLMALLQPAPETFELFDDLVLLSEGYVVYQGPREDVLDFFQSLGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYVFVSVAEIAQAFKNSKFGKYMESLQSHPLDTSKGHPSALARTKYAVPRWDLAKACFSRELLLIRRHSFLYVFRTCQVAFVGFVTCTVFLRTRLHPTDEVYGRLYLSALFFGMVHMMFNGFSELSLLISRLPVFYKQRDNLFYPAWAWSITSWVLRVPYSVIESVIWTVVVYYSVGFAPSAGRFFRYMLLLFLMHQMALGLFRMMAAVARDMVLANTYGSASLLIVFLLGGFIIPKAMIKPWWIWGYWLSPLTYGQRAITVNEFTATRWMKKSENGGSTVGYNVLVSQSLPTADYWYWIGISVVLVYSLFFNNMVTVALTFLNPPRKARTVIPSDDDSEKKSSRDGSNHIYEMSPRSKSAREDSNKKGMILPFQPLTMTFHNVNYFVDMPKEISKQGIPETRLQLLTNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKEQRTFARVSGYVEQNDIHSPQLTIEESLLFSSALRLPKEVGVAKRLEFVEQVMKLVELDALRNALVGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDDLLLMKRGGRVIYGGKLGVQSQIMTDYFQGIKGIPPIPNGYNPATWVLEVTTPATEEKLNIDFAEVYKNSDQYRGVESSILQFGHPPAGSEPLKFDSIYSLNLFSQFLRCLWKQNLVYWRSPSYNAMRLYFTTISALIFGTVFWDAGSKRESTQELFVVMGAMYSACMFLGVNNSSSVQPIVSIERTVFYREKAAGMYSPIAYAAAQGLIEVPYIAVQTIVFGIVTYFMINFERTAAKFFLYLVFMFLTFTYFTFYGMMAVGLTPSQHLAAVISSAFYSLWNLLSGFLIPKSSIPVWWIWFYYICPIAWTLRGIITSQLGDVETIIVGPGFQGTVKEYLAVTLGYDSKINGFSAVGLSAIVLIGFIIIFFGSFAISVKVLNFQKR* 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1072 1435 CDD ABCG_PDR_domain1 154 407 IPR034001 -
Vra6g1072 1435 Pfam ABC-2 type transporter 1156 1368 IPR013525 GO:0016020|GO:0140359
Vra6g1072 1435 Pfam ABC-2 type transporter 506 716 IPR013525 GO:0016020|GO:0140359
Vra6g1072 1435 Gene3D - 153 456 IPR027417 -
Vra6g1072 1435 MobiDBLite consensus disorder prediction 782 799 - -
Vra6g1072 1435 CDD ABCG_PDR_domain2 827 1065 IPR034003 -
Vra6g1072 1435 Gene3D - 843 1076 IPR027417 -
Vra6g1072 1435 Coils Coil 1435 1435 - -
Vra6g1072 1435 SMART AAA_5 867 1059 IPR003593 -
Vra6g1072 1435 SMART AAA_5 176 401 IPR003593 -
Vra6g1072 1435 Pfam Plant PDR ABC transporter associated 721 784 IPR013581 -
Vra6g1072 1435 Pfam ABC transporter 858 1010 IPR003439 GO:0005524
Vra6g1072 1435 Pfam ABC transporter 167 350 IPR003439 GO:0005524
Vra6g1072 1435 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 425 IPR003439 GO:0005524
Vra6g1072 1435 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1435 - -
Vra6g1072 1435 Pfam ABC-transporter N-terminal 84 141 IPR029481 -
Vra6g1072 1435 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 830 1082 IPR003439 GO:0005524
Vra6g1072 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Vra6g1072 1435 Pfam ABC-2 type transporter 383 433 IPR043926 GO:0140359
Vra6g1072 1435 Pfam ABC-2 type transporter 1039 1101 IPR043926 GO:0140359
Vra6g1072 1435 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 1435 - -
Vra6g1072 1435 MobiDBLite consensus disorder prediction 782 816 - -
Vra6g1072 1435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 855 1066 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1072 Vra-Chr6 16343301 16355956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1072 855 1042 Calmodulin-binding Proteins AT2G36910 27.320 2.98e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1072 K08711 - gmx:100816324 2491.46