Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1060 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAAGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGGGGCAGGAGCACCGGCACTAGCACCGCCGCCGCCGCCACCACCTCCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGGTTCCCCGTATTACTATGGATATTCTGTGCAAGCACCAAGAACTACCTTTTCCACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAACCCTCATTTTCTGCATATCGTCCACCACCTCAGTTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCACGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 828 0.4952 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPGAGAPALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRTTFSTPQPHRIPAGPSYLYYPTPMEPSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTTSEAAGGVVITSESSNTQGRN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1060 275 PANTHER GEO13361P1-RELATED 1 265 - -
Vra6g1060 275 PANTHER - 1 265 - -
Vra6g1060 275 Gene3D - 3 111 IPR012677 -
Vra6g1060 275 MobiDBLite consensus disorder prediction 221 275 - -
Vra6g1060 275 MobiDBLite consensus disorder prediction 91 136 - -
Vra6g1060 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vra6g1060 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vra6g1060 275 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vra6g1060 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Vra6g1060 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Vra6g1060 275 MobiDBLite consensus disorder prediction 245 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1060 Vra-Chr6 15785082 15790040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1060 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.48e-15 74.7