Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1059 ATGGAGCAAGAGACGCAAGTTTTAGACAGAGGGAATACTGTCCCCACAAATTTTGAAGATTATAGATATAGTTTCCTTCTTTACCTTAACATGAATCAAAACCAGCTTCAGCCTCTGCCTTTGCTTAGTAGCTTCCTAGGTTCATCTCCCGAAGAAGCTTTGCTACCAAACCAAAATCCTAAACTACATCATGGTCAAGTTGAGGATGTCACTGTAGCCTTACACATAGGCCTACCCAACAATTCAAGTGGTGGTTCCACCAATGATCATGGACTTGTGAATGCCACAACTCATGCTCCTACCAACTACTGGATACCAACTCAAGAACAAATCCTCATTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCGGCAAAACCTTCAATCGCCACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGGAGAGGAGCGGACTCGCTTAAGCGAACCCACCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCTCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCTCTGAAGGACTTTCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCTCGAAACCCTTCACGTGCCGCAAGTGCGCGAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATGAAGGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 792 0.4886 MEQETQVLDRGNTVPTNFEDYRYSFLLYLNMNQNQLQPLPLLSSFLGSSPEEALLPNQNPKLHHGQVEDVTVALHIGLPNNSSGGSTNDHGLVNATTHAPTNYWIPTQEQILIGFSHFSCPVCGKTFNRHNNLQMHMWGHGSQYRRGADSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHFKRKHGSKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHMKAFGFGHTPFTSSSDAM* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1059 263 Pfam Zinc finger, C2H2 type 118 137 IPR013087 -
Vra6g1059 263 Gene3D Classic Zinc Finger 117 140 - -
Vra6g1059 263 SMART c2h2final6 118 140 IPR013087 -
Vra6g1059 263 SMART c2h2final6 165 197 IPR013087 -
Vra6g1059 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Vra6g1059 263 SUPERFAMILY beta-beta-alpha zinc fingers 113 140 IPR036236 -
Vra6g1059 263 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Vra6g1059 263 PANTHER ZINC FINGER PROTEIN WIP2 32 258 IPR043584 GO:0003700|GO:0010468
Vra6g1059 263 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 32 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1059 Vra-Chr6 15720677 15722911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1059 24 258 C2H2 Transcription Factor Family AT1G34790 56.489 1.50e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g1059 zf-C2H2 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1059 - - vra:106763495 533.487