Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1057 ATGAAACGATCACTTTTGGACTATGATGGTGGAGAATTCATAGGTCAAGATATTATACCAATATTCATAGCAGTTAGGTATTTATTTGGACTCTCACTTTTGTTAGTACTATTCCTCTATAAATGGCGAAGAAGACATTTTTCAGTGTATGAAAACATTGAGAACTTTTTGTTAGACAACAATATAAATCCCATTAGGTATGAGTACAAAGAAGTGAAGAAAATGACTAAAGGTTTCAAAGTGAAGTTAGGTGAAGGAGGTTTTGGTTCTGTTTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGCAGTAAAGATGTTGAGCAAATCCAAAGATAGTGGACAAGACTTTGTTAATGAAGTAGCTACCATTGGAAGAATACATCATGTGAATGTTGTAGGTCTTATTGGGTATTGTGTTGAAGGAAAAAAACGTGGTTTAATTTATGAATACATGCCTAATGGATCATTGGATAAATATATTTTCTCTAAAGAAGGAAGTGTTCCTTTGAGATATGAGAAGATATATGAAATATCTATTGGAATTGCTCATGGGATAGCATATCTTTATCGAGATTGTGATGTGCAGATTTTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGATAATTTTATTCCAAAGGTTTCAGATTTTGGACTTGCAAGGTTGTATCCTACAAAAGATGGATCAATTATTTTAACTGCAATAAGAGGAACATTGGGCTACATGGCTCCAGAGTTATTTTACAAAAATATAGGTGGAGTTTCTCATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGACGAGTAGGAGAAAAAACTCAAATCCTCATGCAGAACATTCAAGTCAACATTATTTTCCCTTTTGGATCCATGATCAACTTAAAGAAGACAAAGATATTGACATGGAAGGTGCTTCAGAAATGGATAAGATTTTGATGAAAAAAATGTTTATAATTGCACTTTGGTGTATACAATTCAAACCAAGTGATCGTCCATCAATGAACAAGGTTGTAGAGATGCTTAAAGGAAAAGTTGAAAGTCTTAATATTCCTCCAAAACCTTCTTTTTATCCTCATGAAATGTTAGAAAATGATGGTACAATCAACTCTCCAAGAACATCATGGATTGATTCAAATAGTTCGAGTATGATTGTTGACATAAAAATTCCTAATCACTAA 1197 0.3266 MKRSLLDYDGGEFIGQDIIPIFIAVRYLFGLSLLLVLFLYKWRRRHFSVYENIENFLLDNNINPIRYEYKEVKKMTKGFKVKLGEGGFGSVYKGKLRSGLDVAVKMLSKSKDSGQDFVNEVATIGRIHHVNVVGLIGYCVEGKKRGLIYEYMPNGSLDKYIFSKEGSVPLRYEKIYEISIGIAHGIAYLYRDCDVQILHFDIKPHNILLDDNFIPKVSDFGLARLYPTKDGSIILTAIRGTLGYMAPELFYKNIGGVSHKADVYSFGMLLMEMTSRRKNSNPHAEHSSQHYFPFWIHDQLKEDKDIDMEGASEMDKILMKKMFIIALWCIQFKPSDRPSMNKVVEMLKGKVESLNIPPKPSFYPHEMLENDGTINSPRTSWIDSNSSSMIVDIKIPNH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1057 398 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 376 IPR045874 GO:0004672
Vra6g1057 398 SMART serkin_6 77 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1057 398 Gene3D Phosphorylase Kinase; domain 1 54 151 - -
Vra6g1057 398 SUPERFAMILY Protein kinase-like (PK-like) 62 347 IPR011009 -
Vra6g1057 398 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 376 - -
Vra6g1057 398 ProSiteProfiles Protein kinase domain profile. 77 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1057 398 Gene3D Transferase(Phosphotransferase) domain 1 152 356 - -
Vra6g1057 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vra6g1057 398 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vra6g1057 398 Pfam Protein tyrosine and serine/threonine kinase 80 347 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1057 Vra-Chr6 15713448 15714644 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1057 59 380 Receptor kinase-like Gene Family AT5G38280 47.130 6.05e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1057 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1057 - - var:108336466 729.169