Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1056 ATGCTCAGTTTTCAGAAGCTATCTCTTCTATTGACGCTGCTGTTTCTGATATGGAAACCTGCGACCGGCAAGAACCACTGCGCCAATAAATGTGGCCACGTGCACATTGAATTTCCATTTTATCTCAGAAACAAAAACTTGAATCACTCCACCGACTACCCCCCTGAGTTCGGTCTGTTATGCACCCAAAAAAATGTGCCCATTCTGGAGCTGCTGGCTGTTCCAATACAATTGTTTGTCAGAAAAATTCATTACAAATCTACTCTAATTGAAACATATGACCCCCAAAATTGCCTTCCCAATCAACTCTTGAAACTCGGCAACGCATCCATCTTTCCATTGCGATTTCAGAAATATTATCCTCACAAGTTTAACTTTTCCTTCTTCCGTTGCGATTCACTGACGTGCCCAATTTTTCTACTACAATCCGACAACGGCGTCGATGACCCCCGATTGGTATCCTGCACGAAGCTGAAAGATGTTTCCACCGAATGGTGGTATCGGTATCATGAGGATAGGCTGCTTTTGGAATGGCCCGAACCTGACTGTGGAGACTGTGAAGCACAAGGCCAAAAATGTAAATGGAAGAATGGTACTAACGGTGCAACTGAATGTCATGCTTGCCGAACAAAACGGATTCCAACGTCAACTGTCATCTACATAGCTGTAGGGGGAGTAGTTGGTTTGATGCTTTTGCTGCTACTGGTCAAGGCATTGTTTTATGCGTATGACTATTATGTGAAGAGAGGAGAAGACCAGACTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTACGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGCTGTGAAGATTCTCAAAGACACAGTGGGAGATGGGAAGGATTTCATAAATGAAGTGAGGGCCATTGGGAAAATTCATCACGTTCACATTGTTCGTCTGCTTGGTTTCTGCGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGCTCCAGCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGGCAGAGGAATTGAGTATCTCCACCTCGGCTGTGATCATAGAATTCTTCATTTTGACATCAATCCTCACAATGTTTTGCTAGATAACCTTTTTGTCCCAAAAATCACTGATTTTGGACTAGCCAAATTGTGTCCAAAAAATCAGAGCACGGTGTCGATGACTGCAGCCAGGGGAACTTTGGGCTACATTGCCCCTGAAGTTTTCTCTCGGAATTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGAATGTTGCTGTTAGAAATGATTGGAGGAAGAAAGAATACCAATGTCTCAGTTGAGGACAGTTTCCAAGTTCTGTACCCGGAGTGGATCCACAACTTGTTGGAAGGAAGGGATGTGCAAATTAGCCTTGAGGACGAGGGAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAATGGAACCCAGCAGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGCATGGATGTGAATTAGTAGCACCCGCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACCGTTCTTCCAGCAAGACCTCAAAATTTAGAGTTGGAAGTTATTCATGAAATAGAAGAAAACAATATCGATCAATTTTAG 1803 0.4315 MLSFQKLSLLLTLLFLIWKPATGKNHCANKCGHVHIEFPFYLRNKNLNHSTDYPPEFGLLCTQKNVPILELLAVPIQLFVRKIHYKSTLIETYDPQNCLPNQLLKLGNASIFPLRFQKYYPHKFNFSFFRCDSLTCPIFLLQSDNGVDDPRLVSCTKLKDVSTEWWYRYHEDRLLLEWPEPDCGDCEAQGQKCKWKNGTNGATECHACRTKRIPTSTVIYIAVGGVVGLMLLLLLVKALFYAYDYYVKRGEDQTRIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSREILVAVKILKDTVGDGKDFINEVRAIGKIHHVHIVRLLGFCADEFHRALVYDFFPNGSLQRFLAPADNKDVFLGWEKLQQIALGVGRGIEYLHLGCDHRILHFDINPHNVLLDNLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMIGGRKNTNVSVEDSFQVLYPEWIHNLLEGRDVQISLEDEGDAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGHGCELVAPASPFHISGSSTTNTVLPARPQNLELEVIHEIEENNIDQF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1056 600 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 39 593 - -
Vra6g1056 600 Gene3D Phosphorylase Kinase; domain 1 255 355 - -
Vra6g1056 600 Gene3D Transferase(Phosphotransferase) domain 1 356 557 - -
Vra6g1056 600 Pfam Protein kinase domain 285 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1056 600 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Vra6g1056 600 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 593 IPR045874 GO:0004672
Vra6g1056 600 SUPERFAMILY Protein kinase-like (PK-like) 261 552 IPR011009 -
Vra6g1056 600 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Vra6g1056 600 ProSiteProfiles Protein kinase domain profile. 281 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1056 Vra-Chr6 15691705 15693970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1056 27 564 Receptor kinase-like Gene Family AT1G66910 34.590 1.37e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1056 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1056 - - var:108338466 982.63