Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1055 ATGAGCCTCTTACCCTCTTGCTTTCGCTGCGCACAATCAGTGGTTGTGTCGGTGGTCATCATTCTTGTGCTATTCCACCAAACTTGCAGTGCCAAGCATCGCAGATCCTGTCCATCTTCTTCGTGCGGCGGAATTCGCGACATAAAATATCCATTCCGACTGAAAGGCGATCCTCGCGGTTGCGGCCTCCCCGGGTACGAATTTGATTGCGTGAATAACAGGACACTGGTTACTCTTTTTTCAGGAAAATACTATGTGAAGGAAATCAATTACAATATGTACGAAATCCGGCTAAGTGAAGCGGGTGTTGTGGAGGAGACTTCTTGCTCTTTTCCTCGCTATTTCTTATCCCCGCAAAATTTCAGTGGATATGCCGATGATCCGCTGACTTTTCCGAACTATTGGTCGCATGCTTATTGTTTTGCAAACGTAGGGTTTCTAAACTGTAGTAACCGAGTGAGTGATGATCCTCGATATGTCGAAGTGAAAGCATGTGGTAGTGATTCCGGAGGAGTTATCTACGCCGTTCTGGACCTTACAGCGGAGGATACGAAGGTTGGATGCAGATTAAAGATGGCTACCTTGGCAAACTGTACATATAACAAGAATGTTTCCTATGCTGATATCCTCAAATCTATGGAAGAAGGAATTTGGTTGTCTTGGTTTCCAGTTGTTTGCAGGGACCACTGTGGAAATGGTGTCTCTTGCTTCCTCAATGAAACCACCAAACAAATTCAATGCGATACTTGCCAAATCTACAACCATCCTACCTACAATTGTGGAATTCTATCGCGAATTATTGGATACCCTACAGGTTTTTTGAAAAGCATCATAAAAGGAATATTCAATAGAATAACAAATGCCGAAGGATCAAATGATGTGGGAGAATTGATAGGTCAATATATTCTACCAATATTAATTGCAACTAGATATTTGTTTGGACTCTCACTTTTTCTAGTGATATTCATCTATAAATGGCGACGTAGACATTTTTCAATGTATGAAAACATTGAAAATTTTTTGTTAGACAACAATATAAATCCCATTAGATATGAGTATAGAGAAGTGAAGAAAATGACTAAAGGTTTCAAAGTGAAATTAGGAGAAGGAGGTTTTGGTTCTGTGTACAAAGGAAAGCTTCAAAGTGGCATAGATGTAGCAATAAAGATGTTGAGCAAATCCAAAGACAATGGACAAGACTTTGTTAATGAAGTAGCTACCATTGGAAGAATACATCATGTGAATGTTGTAGGTCTTATTGGATATTGTGTTGAAGGAAAAAAGCGTGGTCTAATTTATGAATACATGCCTAATGGGTCATTGGATAAATTTCTTTGTCTCGGTTTTGAACTGAGGCAAAAATGTGGCACAATCCGTACTAGAAGCACACCATCTTCTCAACCTCTCCTCTTAGATCCTATAATTAAAAAGACTGCCCGAAGAAACAATAGTAGAAGAAGAAGAAGAAGAGAGAATCGGGCATCTAGAGAAACTTCTCCCATTCTTGTGATTACTGAGCAACCCATCTTACCTGCAGCTGATCAAGAAGTTGAAGATATGGCTGACAATCGGAATGATAATGGTGATGGGCAAGTGAGACGCACATTGGAGGACTACTCCGCTTTTTCAGGGTTGCTTCATTTCAATAGCATTGCACGACCACGGGTCAATGCCCCAAACATGAAGATGAAGCCTGCTCTCATTCATCTTGTGCAGAGTAATAAGTTCCATGGTCTATCACATGAGAACCCATTCAATCACATAACCAGCTTCATTGAGATATGTAACACGGTTAAGCTCCAAGATGTATGTGATGAAGCTGTAAGGCTCAACCTATTTCCATTCTCATTGGGACGCAACACCAAGGCGTGGCTCAATTCCTTTCCTGAAAATAGCTTCACATCATGGCAAGAGGTGGTGGCAAAATTTTGCAACAAATACTTCCCTCAGTCCAAAGTTAACAAAGGGAAGTAG 1974 0.4073 MSLLPSCFRCAQSVVVSVVIILVLFHQTCSAKHRRSCPSSSCGGIRDIKYPFRLKGDPRGCGLPGYEFDCVNNRTLVTLFSGKYYVKEINYNMYEIRLSEAGVVEETSCSFPRYFLSPQNFSGYADDPLTFPNYWSHAYCFANVGFLNCSNRVSDDPRYVEVKACGSDSGGVIYAVLDLTAEDTKVGCRLKMATLANCTYNKNVSYADILKSMEEGIWLSWFPVVCRDHCGNGVSCFLNETTKQIQCDTCQIYNHPTYNCGILSRIIGYPTGFLKSIIKGIFNRITNAEGSNDVGELIGQYILPILIATRYLFGLSLFLVIFIYKWRRRHFSMYENIENFLLDNNINPIRYEYREVKKMTKGFKVKLGEGGFGSVYKGKLQSGIDVAIKMLSKSKDNGQDFVNEVATIGRIHHVNVVGLIGYCVEGKKRGLIYEYMPNGSLDKFLCLGFELRQKCGTIRTRSTPSSQPLLLDPIIKKTARRNNSRRRRRRENRASRETSPILVITEQPILPAADQEVEDMADNRNDNGDGQVRRTLEDYSAFSGLLHFNSIARPRVNAPNMKMKPALIHLVQSNKFHGLSHENPFNHITSFIEICNTVKLQDVCDEAVRLNLFPFSLGRNTKAWLNSFPENSFTSWQEVVAKFCNKYFPQSKVNKGK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1055 657 MobiDBLite consensus disorder prediction 479 498 - -
Vra6g1055 657 ProSiteProfiles Protein kinase domain profile. 361 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1055 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 445 IPR045874 GO:0004672
Vra6g1055 657 SUPERFAMILY Protein kinase-like (PK-like) 347 445 IPR011009 -
Vra6g1055 657 Gene3D Phosphorylase Kinase; domain 1 339 435 - -
Vra6g1055 657 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 445 - -
Vra6g1055 657 Pfam Wall-associated receptor kinase galacturonan-binding 37 99 IPR025287 GO:0030247
Vra6g1055 657 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vra6g1055 657 Pfam Protein tyrosine and serine/threonine kinase 364 445 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1055 Vra-Chr6 15652017 15675878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1055 12 445 Receptor kinase-like Gene Family AT5G38260 27.412 8.25e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1055 PK_Tyr_Ser-Thr 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1055 - - vra:106763492 1332.39