Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1054 ATGCTCAATTTTCAGAAGCTGTCTCTTCTATGGATGCTGCTGTTTCTGGTAGGGAATCCTGCGACCGGCAAGAACCACTTCGCCGATAAATGTGGCAACGTTCGCATTCAATTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACCGACTACCCGCCTGAGTTCGGTCTGTTATGCACCCAACAAACAATTCTGGAGCTGCCTGCCCTTCCAATACAATTGTTTGTCACAGAAATTGGTTACGAATATATGCTAATTAGAGTATATGACCCCCAAAATTGCCTTAATGATCAAATTTTGAAACTCGGCAAGGCTTCCATCTCTCCATTCCGATTTCGCACAGATGATACCAAGTCTCACGTTTCCGTCTTCCAATGCGATTCCTCGTGCCCAATTTTTGTAGGAGGATCCGACATCGTCTCCACTGACCCCCAATTGGTATCCTGCACGAAGCTGAAAGATGTTTACGTCGAAGGGTGGGCTTGGTACAATGGGGGTAGGTTTGTTATGGAATGGTCAAAACCTGACTGTGGAGACTGTGAAGCACAAGGCCAAAAATGTAAATGGAAGAATGGTACTAACGGTGCGACTGAATGTTATTCTAGCCAAACAAAAAGGATTCCCACGTCAACTGTCGTCCGCATTGCTGCAGGAATAGGTGGTTTCATGCTTTTGCTGCTATCGGTCATGGCATTGTTTTATACATATGACTTCTATAAGAAGAGAGGAGAAGACCAGGCTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTACGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTAGTGAAATTCTTGTTGCTGTGAAGATACTCAAAGACACAGTGATAGATGGAAAGGATTTCATAAATGAAGTCAGAGCCATTGGGAAAATTCATCACGTTAACATTGTTCGCCTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTTGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGTTCAACCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGGAAAGGGATTGAGTATCTCCACCTTGGTTGTGATCATAGAATTCTTCACTTTGACATTAATCCTCACAATGTTTTGTTAGATGACCTTTTTGTCCCAAAAATCACTGATTTTGGCTTAGCCAAGCTGTGTCCCAAAAATCAGAGCACGGTGTCGATGACTGCAGCCAGGGGAACTTTGGGCTACATTGCCCCCGAGGTTTTCTCTCGGAACTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGGATGTTGCTACTAGAAATGGTTGGAGGAAGAAAGAATACAAATGTGTCAGTTGAGGACAGTTTCCAAATTCTGTACCCAGAGTGGATCCATAACTTGGTGGAAGGAAAAGATGTGCAAATTAGCGTTGAGGATAATGCAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGCAGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGCGATGGATGTGAGTTAGTAGCACCCCCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACCATTTTTCCGGCAAGGCGTCAAAATTTTGAGTTGGAGGTTATTCATGAAATAGAAGAAAACAGTGTCGATCACTTTTAG 1788 0.4306 MLNFQKLSLLWMLLFLVGNPATGKNHFADKCGNVRIQFPFYLRNKNLNHTTDYPPEFGLLCTQQTILELPALPIQLFVTEIGYEYMLIRVYDPQNCLNDQILKLGKASISPFRFRTDDTKSHVSVFQCDSSCPIFVGGSDIVSTDPQLVSCTKLKDVYVEGWAWYNGGRFVMEWSKPDCGDCEAQGQKCKWKNGTNGATECYSSQTKRIPTSTVVRIAAGIGGFMLLLLSVMALFYTYDFYKKRGEDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSSEILVAVKILKDTVIDGKDFINEVRAIGKIHHVNIVRLLGFCADEFHRALVYDFFPNGSLQRFLVQPDNKDVFLGWEKLQQIGLGVGKGIEYLHLGCDHRILHFDINPHNVLLDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQILYPEWIHNLVEGKDVQISVEDNADAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDGCELVAPPSPFHISGSSTTNTIFPARRQNFELEVIHEIEENSVDHF* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1054 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 41 588 IPR045874 GO:0004672
Vra6g1054 595 Gene3D Transferase(Phosphotransferase) domain 1 351 551 - -
Vra6g1054 595 ProSiteProfiles Protein kinase domain profile. 276 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1054 595 Pfam Protein kinase domain 280 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1054 595 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 41 588 - -
Vra6g1054 595 Gene3D Phosphorylase Kinase; domain 1 250 350 - -
Vra6g1054 595 SUPERFAMILY Protein kinase-like (PK-like) 258 547 IPR011009 -
Vra6g1054 595 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Vra6g1054 595 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1054 Vra-Chr6 15649226 15652145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1054 178 559 Receptor kinase-like Gene Family AT5G38260 44.388 1.43e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1054 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1054 - - var:108338466 1157.51