Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1053 ATGTTTGGGTCAAGATCAGGTGAAGGATCAAAGGGTATATTTATAACTGGAGAAGATGAAGGTGTGCTAATCATCTATAAATGGCGAAGAAGACATTTTTCAATGTATGAAAACATTGAAAATTTTTTGTTAGAAAACAGTATAAATCCCATTAGATATGAGTACCGAGCGGTGAAGAAAATGACTAAAGGTTTTAAAGTGAAGTTAGGAGAAGGAGGTTTTGGTTCTGTGTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGCAGTAAAGATGTTGAGCAAATCTAAGGATAATGGTCAAGAATTTGTTAATGAAGTAGCTACCATTGGAAGAATACACCATGTGAATGTGGTAGGTCTTATTGGATATTGTGTTGAGGGAAAAAAGCGTGGCTTAATTTATGAATACATGTCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGAAGGAAGTGTTCTTTTGAGTTATGAGAAGATATATGAAATATCTCTTGGAATTGCTCATGGAATAGCATATCTACATCAAGGCTGTGATGTGCAGATTTTACATTTCGACATCAAGCCTCATAATATTCTGTTAGATGATAACTTTACTCCAAAGGTTTCAGATTTTGGACTTGCAAAATTGTATCCTACAAAAGACAAATCCATTATTTTGACTGCAATAAGAGGAACATTGGGTTATATGGCTCCAGAATTATTCTACAAAAATGTAGGTGGAGTTTCTTATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAGGAGGAAAAACTCAAATCCTTTAGCAGAACATTCAAGCCAACATTATTTTCCATTTTGGATTCATGATCAATTTAAAGAAGAGAAAGATATTGACATGAAAGATGCTTCAGAAATGGATAAGATTCTAATGAAAAAAATGTTCATAGTGGCACTTTGGTGTATACAATTTAAACCAAATGATCGTCCATCAATGAATAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAACTCTTGAAATTCCTCCAAAACCTACATTTTATCTTCAAGAAATATTAGAACATGATGATACAGTCTACTCTGATGAAACACCAAGGAGTGATTCAACTAGTTCTGTGAATGTTGATGCAAACATGTCTAATCACTAA 1152 0.3351 MFGSRSGEGSKGIFITGEDEGVLIIYKWRRRHFSMYENIENFLLENSINPIRYEYRAVKKMTKGFKVKLGEGGFGSVYKGKLRSGLDVAVKMLSKSKDNGQEFVNEVATIGRIHHVNVVGLIGYCVEGKKRGLIYEYMSNGSLDKYIFSKEGSVLLSYEKIYEISLGIAHGIAYLHQGCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYPTKDKSIILTAIRGTLGYMAPELFYKNVGGVSYKADVYSFGMLLMEMASRRKNSNPLAEHSSQHYFPFWIHDQFKEEKDIDMKDASEMDKILMKKMFIVALWCIQFKPNDRPSMNKVVEMLEGKVETLEIPPKPTFYLQEILEHDDTVYSDETPRSDSTSSVNVDANMSNH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1053 383 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 363 IPR045874 GO:0004672
Vra6g1053 383 MobiDBLite consensus disorder prediction 360 383 - -
Vra6g1053 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vra6g1053 383 Gene3D Phosphorylase Kinase; domain 1 39 137 - -
Vra6g1053 383 SMART serkin_6 63 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1053 383 SUPERFAMILY Protein kinase-like (PK-like) 47 334 IPR011009 -
Vra6g1053 383 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 22 363 - -
Vra6g1053 383 Gene3D Transferase(Phosphotransferase) domain 1 138 342 - -
Vra6g1053 383 MobiDBLite consensus disorder prediction 365 383 - -
Vra6g1053 383 ProSiteProfiles Protein kinase domain profile. 63 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1053 383 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Vra6g1053 383 CDD STKc_IRAK 69 335 - -
Vra6g1053 383 Pfam Protein kinase domain 67 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1053 Vra-Chr6 15625900 15628401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1053 22 372 Receptor kinase-like Gene Family AT4G18250 44.444 2.22e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1053 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1053 - - var:108336466 608.986