Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1051 ATGAAACTGCAAATCAACATGCTTAATTTTCAGAAGCTGTCTCTTCTATGGACGCTGCTGTTTCTGGTAGGGAATCCTGCGACCGGCAATAACCACTGCGCTGATAAATGTGGCAACGTTCGCATTCAATTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACCGACTACCCGCCTGAGTTCGGTCTGTTATGCACCCAACAAAATGAGCCCATTCTGGAGCTGCCTGCACTTCCGATACAATTGTTTGTCAGAGAAATTGATTACGAATCTACGCTAATTGAAATATATGACCCCCAAAATTGCCTTCCCGATCAACTCTTGAAACTCGGCAATGCATCCATCTCTCCATTCCGATTCCCCAAAAGTCTTGGTCGTCCTCCTCCTAAGTTTGACGTTTCCTTCTTCTGTTGCGACTCATTGTCGTGCCCTATTTCGCTACTAGAATCCCACAACGACGTTGTTGATCCTCGATTAGTATCCTGCACGAAGCTGAAAGATGTTTCCGTCGAATGGTTGTATTGGTATAATGGGGTGAAGTTAGTTATGGAATGGTCAAAACCTGACTGTGGATACTGTGAAGCACAGGGCCAAAAATGTAAATGGAGGAATGGTACTAACGGTGGAACTGAATGTTATGCTTGCCGAACAAAAAGGATTCCCACGTCAGCTTTCATCCACATTGCTGCAGGGGGAGTAGTTGGTTTGATACTTTTGCTGCTACTGGTCAAGGCATTGTTTTATGCGTATGACTATTATGAAAAGAGAGGAGAAGACCAGACTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTACGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAGATGGGAAGGATTTCATAAATGAAGTGAGGGCCATTGGGAAAATTCATCACGTTCACATTGTTCGTCTGCTTGGTTTCTGCGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGCTCCAGCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGGCAGAGGAATTGAGTATCTCCACCTCGGCTGTGATCATAGAATTCTTCACTTTGACATCAATCCTCACAATGTTTTGCTAGATAACCTTTTTGTCCCAAAAATCACTGATTTTGGACTAGCCAAGTTGTGTCCGAAAAATCAGAGCACGGTGTCGATGACTGCAGCCAGGGGAACTTTGGGCTACATTGCACCTGAGGTTTTCTCTCGGAACTTTGGTAACGTGTCTTACAAGTCTGACATTTACAGCTACGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACCTATGTCTCAGTTGAGGACAGGTTCCAAGTTCTGTATCCAGAGTGGATCCATAACTTGGTGGAAGGAAAAGATGTGCAAATTAGCCTTGAGGATGATGCAGATGCTAAAATTATCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGCGGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGATGGATGTGAATTAGTAGCACACCCTTCTCCTTTTCATATTTCTGGTTCTTCAACAATAAATACCGTTGTTCCGGCAAGACGTCAAAATTTTGAGTTGGAGGTTATTCATGAAATGGAAGAAAACAGTGATCACTTTTAG 1830 0.4344 MKLQINMLNFQKLSLLWTLLFLVGNPATGNNHCADKCGNVRIQFPFYLRNKNLNHTTDYPPEFGLLCTQQNEPILELPALPIQLFVREIDYESTLIEIYDPQNCLPDQLLKLGNASISPFRFPKSLGRPPPKFDVSFFCCDSLSCPISLLESHNDVVDPRLVSCTKLKDVSVEWLYWYNGVKLVMEWSKPDCGYCEAQGQKCKWRNGTNGGTECYACRTKRIPTSAFIHIAAGGVVGLILLLLLVKALFYAYDYYEKRGEDQTRIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSREILVAVKILKDTVGDGKDFINEVRAIGKIHHVHIVRLLGFCADEFHRALVYDFFPNGSLQRFLAPADNKDVFLGWEKLQQIALGVGRGIEYLHLGCDHRILHFDINPHNVLLDNLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTYVSVEDRFQVLYPEWIHNLVEGKDVQISLEDDADAKIIKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDDGCELVAHPSPFHISGSSTINTVVPARRQNFELEVIHEMEENSDHF* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1051 609 Gene3D Transferase(Phosphotransferase) domain 1 365 567 - -
Vra6g1051 609 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 45 603 - -
Vra6g1051 609 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Vra6g1051 609 Pfam Protein kinase domain 294 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1051 609 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Vra6g1051 609 SUPERFAMILY Protein kinase-like (PK-like) 270 561 IPR011009 -
Vra6g1051 609 Pfam Wall-associated receptor kinase galacturonan-binding 33 100 IPR025287 GO:0030247
Vra6g1051 609 ProSiteProfiles Protein kinase domain profile. 290 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1051 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 45 603 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1051 Vra-Chr6 15607863 15609784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1051 233 575 Receptor kinase-like Gene Family AT4G18250 43.785 1.32e-95 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1051 Pkinase 5.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1051 - - var:108338466 1027.7