Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1048 ATGGCATCACCAGCAGTGAAGCTTTACGTGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAAGTGTATTTATCCAACCCTGGCGGATTTGTTACCAGAATTCAATATAGTGGCATTGATAATCTGCTTGAAACTCGTAACAAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACTGGGACCACTGGGACATTTGAACGGATTGTGGGAACTAGTTTTAGTGTGATAGTGGAAAATGAGAAAGAGGTTGAAATCTCATTTACAAGTAAGTGGGATCCATCTCTCAAGGGAGAGAAAGCGCCTCTTAATATTGATAAGAGGTATGTGATGCTTTCCAATTCCTCGGGATTTTACTCCTACAGCATCTTTGAACACTTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAACTTAGTAAAGATAAGTTTCATTACATGGTGGTGTCTGATAATAGACAAAGATTTATGCCTCTCCCTGACGACAGATTGCCAGGAAGAGGAGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTTGTTAACCCTTTCGAGCCAGAGTTTAAGGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTTCATGGATGGATAAGTTCTCAATCTCAAACCGACCCATTTGTAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCAGGTGGCCCAGTAAAACAGAACCTTACTTCTCACGTCGGCCCAATAAGCCTAGCTATGTTTCTGAGTGCTCATTATGCAGGAGAAGATATAGTTCTGAAACTGCAACCAAAGGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTATTAGATGGTGATGACCCCAAAGTGCTATGGGAAGATGCTAAAGATAAGACTAAGGCAGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTACCCAACGAGGCAGTGTCTGTGGCACATTACTAGTCCAAGACAGGTTTTTGAGTGATGAATACATTGTAGCAGAAGGCGCTTATATAGGAGTGGCAGCACCGGGAGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATAAAGAATATACGCAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGTAATGTTCTCCTTACCATAACACCAGGTTGTGAAATTGATGTTGGTGAGATTGTTTTTGAGGCTCCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCAGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATCAATAAGCTTTACGTTCATCATCCAGACAAGTATAGGCAATATGGGTTGTGGGAAAGGTATGCAGAATTATACCCAAATGAAGATTTAATTTACACTGTGGGTGTAAGTGATTATACAAAAGATTGGTTCTTTGCACAGGTCACCAGAAAGAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGACACAGAGGCTAGTAAAATCTACAAACTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGGGTGAATGATCCAGGACAAGACCCTCCTCTGTTTACTACAGGGGTGATTGGAAAAGACTTTTCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGTCTGGTTTTTTCCTAGAAAAAGGTGTTAACAATCTGTTTTTAACTCAAACTGTGGCAACTGGTCCCTTGGCTCGCTTTCAGGGAATAATGTATGATTATATACGCCTAGAAGGTCCTAACCCTTTTTCTGCTATAAAAGAGTATTAA 1953 0.4147 MASPAVKLYVEDDQVVMDNGIVQVYLSNPGGFVTRIQYSGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFERIVGTSFSVIVENEKEVEISFTSKWDPSLKGEKAPLNIDKRYVMLSNSSGFYSYSIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPFEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTDPFVGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPKEPWKKVFGPTFVYLNTLLDGDDPKVLWEDAKDKTKAEVQSWPYDFPASEDFQKSTQRGSVCGTLLVQDRFLSDEYIVAEGAYIGVAAPGEAGSWQRECKGYQFWSKANEKGYFSIKNIRSGDYNLYAWVPGFIGEYWSNVLLTITPGCEIDVGEIVFEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVHHPDKYRQYGLWERYAELYPNEDLIYTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPGQDPPLFTTGVIGKDFSIARHGIHGLYWLFNIDVSGFFLEKGVNNLFLTQTVATGPLARFQGIMYDYIRLEGPNPFSAIKEY* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1048 650 SUPERFAMILY Starch-binding domain-like 337 434 IPR013784 GO:0030246
Vra6g1048 650 CDD RGL4_C 449 639 - -
Vra6g1048 650 Gene3D - 445 639 - -
Vra6g1048 650 PANTHER LG27/30-LIKE GENE 1 645 - -
Vra6g1048 650 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Vra6g1048 650 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Vra6g1048 650 Gene3D - 335 433 - -
Vra6g1048 650 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 645 - -
Vra6g1048 650 CDD RGL4_N 6 306 - -
Vra6g1048 650 Gene3D - 6 278 IPR014718 GO:0030246
Vra6g1048 650 CDD RGL4_M 338 437 IPR029413 -
Vra6g1048 650 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Vra6g1048 650 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra6g1048 650 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1048 Vra-Chr6 15433379 15439736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1048 1 642 Polysaccharide Lyase AT1G09890 61.897 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1048 K18195 - gmx:100815677 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1048 6 15433379 15439736 Vra6g1048 6 15433379 15439736 ECH