Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1036 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACAAGTAGGCAAGTCACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACTGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAAAATTGTCAACTTGGGAGTTCGGCCTCCGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGCCACAGAAAAATCATGGGGGAGGAACTGTCAGGTTTGACAGTCAAAGAGTTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGTGGTGTCCGTATGAAAAAGGATCAACTTCTAATGGATGAAATACAAGAACTAAATCGAAAGGGAAACCTCATACGCCAAGAAAATGTGGAACTGTATAAGAAGGTCCATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACACTATAAGGCTCCTTCAGGAACTGCAAAATTGGGCAGATTGCAATTGCATTGA 678 0.4263 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQELNRKGNLIRQENVELYKKVHGTKDDSETNRDYVLTNGLGIGEDLHVPVNLQLSQPQQHYKAPSGTAKLGRLQLH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1036 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vra6g1036 225 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Vra6g1036 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g1036 225 MobiDBLite consensus disorder prediction 205 225 - -
Vra6g1036 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 221 - -
Vra6g1036 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 Coils Coil 86 106 - -
Vra6g1036 225 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vra6g1036 225 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g1036 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vra6g1036 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1036 Vra-Chr6 14716161 14733814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1036 1 213 MADS-box Gene Family AT4G37940 64.953 1.44e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra6g1036 K-box 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1036 K09264 - gmx:100812413 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1036 6 14716161 14733814 Vra6g1036 6 14716161 14733814 ECH