Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1026 ATGGATTCCCGCGACTCCTCCCCCCGCTCCCGCGACCCCGACGCCGACAACCACCACCACCACTCCTTCGACGAGGCCCCGCCCTCCCTCCATTCCAAGGTCAAGCTTATGTGCAGCTACGGCGGCCGAATCCAGCCTCGCCCCCACGACAACCACCTTACCTACGTCGCCGGCGACACCAAGATCCTCGCCGTAGACCGCCACATCAAGCTCCCCGCCCTCCTCACCAAACTCTCCTCCCTCGCCAACGCCCCCGCCAATGGTACCTTCTTCAAATACCAGCTCCCCGGCGAGGACCTCGACGCTCTAATCTCCGTCACCAACGACGAAGACCTCCACCACATGATGCTCGAGTACGATCGCCTCTCGCGCACCTCGCCAAAACCTGCACGCCTCCGCCTCTTTCTGTTCTCGCTCCACAACAATAACACCAACAGCAACAGCAACATCAATTTCGCACTCACCGATCCCAAACCCGAGCGGCAGTGGTTCGTTGACGCCCTGAATTCCGTTCAGGTTCCGCTTGTTGAAGGTTCTTCGCCGCCGCATACGGCAGCGCCAAATCCAGATTTTCTCTTCGGATTAGATAAGCAGCCGTCGGCGGCTGCCAATGCTCCTACGAAGAATCCTTCGCCGGAAACAGAATGCATCTCCGAGGATCGTCCAGCGGTCAGAGATGCCGAAACCGAAACGGAACGCGCGCCCGAGTCCGAGATTCGGAGGTTGCAGATTGGTCACAATTCTGAGCAGCAACTCCTGCAACGGAAGATGAAAATAGAGGAAGATAATAACGGTAGGGTTCACGGGGTTAACGGCGCGGACGGTTTCTCTCAAAAGAACACGGAGAATGTGACGCCGTTAGTTACGCAAGGGCAAATGCAGGCGCAAGGTTTTCATTCTGGAACGGTGTCGTTTTTGCAGGAGAGGAATAATATGGGCTATTCGCTGGCAGTTCCTACGACCGGGAGTGAGATTTATCTCATTCAGACGCCTTCTGGAATCTTCCAAGCGGTTCGGCCCGTGACTGGACCGGTTGGGCAACCGGTTTATCTGGTTCCGGCGCCTAGTTCAGTTGGCGTGGCGGCGGAGCGTGGATATTCTGCGGGACAGGGAGGAGCGCGGTGGTGA 1128 0.5771 MDSRDSSPRSRDPDADNHHHHSFDEAPPSLHSKVKLMCSYGGRIQPRPHDNHLTYVAGDTKILAVDRHIKLPALLTKLSSLANAPANGTFFKYQLPGEDLDALISVTNDEDLHHMMLEYDRLSRTSPKPARLRLFLFSLHNNNTNSNSNINFALTDPKPERQWFVDALNSVQVPLVEGSSPPHTAAPNPDFLFGLDKQPSAAANAPTKNPSPETECISEDRPAVRDAETETERAPESEIRRLQIGHNSEQQLLQRKMKIEEDNNGRVHGVNGADGFSQKNTENVTPLVTQGQMQAQGFHSGTVSFLQERNNMGYSLAVPTTGSEIYLIQTPSGIFQAVRPVTGPVGQPVYLVPAPSSVGVAAERGYSAGQGGARW* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1026 375 CDD PB1_UP2 37 137 - -
Vra6g1026 375 MobiDBLite consensus disorder prediction 214 237 - -
Vra6g1026 375 MobiDBLite consensus disorder prediction 195 237 - -
Vra6g1026 375 SUPERFAMILY CAD & PB1 domains 49 146 - -
Vra6g1026 375 Pfam PB1 domain 50 138 IPR000270 GO:0005515
Vra6g1026 375 PANTHER OS05G0427100 PROTEIN-RELATED 2 350 - -
Vra6g1026 375 Gene3D - 54 138 - -
Vra6g1026 375 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 2 350 - -
Vra6g1026 375 SMART PB1_new 48 139 IPR000270 GO:0005515
Vra6g1026 375 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1026 Vra-Chr6 14482308 14483997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1026 33 179 MAP Kinase Kinase Kinase AT5G57610 41.216 6.14e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1026 - - vra:106764239 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1026 6 14482308 14483997 Vra6g1026 6 14482308 14483997 ECH