Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1024 ATGGTTTTTGAAAGTGTTAATCAAGCCAAGCCATTTTATAGGCAATATGTAATATCTAAGGGTTTTGGAATTCGAACAACGAGTTCAAGGAAGAACAACAAGAACAAATTATGTTACTTCATGATGGTGTGTTCTAAGGCTAGAAAATATGTCGCCTCCAATCAGAATGAAATTATTGGACGTCCAACACTGGCTAATGATTGTGCAGCTCAAATGATTGTATCAAAAAGAGATGAGAAGTGGTACATTTTAGCATTTGATGATGTACATACTCATGATATTAGTCCAACAAAGTCAAGATTGTTCCAAGGAGGTTATGAGAACATGGAGTTTGTCGAACAAGATGTTAGAAATTATGTCGCCAAACAAAGAAGAGCATTATCAAAAGATGGTGATGTCAAGGCACTCTTAAACCACTTTTCTTCCATGAGAGAATTCAATAAGGATTTCTTTTTCGATATTGATGTTGATGACGACAACCACATACTGAATGTGTTTTGGGCTGATGCACGAAGTAGGACAGCTTATAATTCATCATATTACAAGGTGACGAAGGACTCCATTCGTAATGAAATAAGGGAAGAGAGGGTAGCAACTGTGCAATCCCCTGGGTTCATGTCACTGCTTGCATCATTACACAATGACATGCAAAACACGCAATCGTCCACAACTAACATCAACAATGTTTTGGGATAA 696 0.3721 MVFESVNQAKPFYRQYVISKGFGIRTTSSRKNNKNKLCYFMMVCSKARKYVASNQNEIIGRPTLANDCAAQMIVSKRDEKWYILAFDDVHTHDISPTKSRLFQGGYENMEFVEQDVRNYVAKQRRALSKDGDVKALLNHFSSMREFNKDFFFDIDVDDDNHILNVFWADARSRTAYNSSYYKVTKDSIRNEIREERVATVQSPGFMSLLASLHNDMQNTQSSTTNINNVLG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1024 231 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 186 IPR031052 GO:0006355
Vra6g1024 231 Pfam FAR1 DNA-binding domain 12 95 IPR004330 -
Vra6g1024 231 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1024 Vra-Chr6 14339185 14342882 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra6g1024 FAR1 6.8e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1024 - - vra:106763462 447.588