Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1019 ATGAATAATATATATCATATAATAAGCAATTTGCAACAAGCTTTTCATTGTGCTCTTATAAATATGCTTCAACTTAGTACTATATTGTCTCAAGGCAGTATTTCCAAAACAATTAGCCATCACACCAAGAGAGAGAGAGAGATGGAACTTTATGATAATGATTTCTTGGAGGAATCAATGGCTCTAAGAAGAGAACCATGGGATACCAATCCATGTTCACAAGAAAACCAGCTTTTCTCTAATGCTTGGAGTTTTGATTGTTTTGATCAAAACTATCAAGCTTTTCCTTCAAATTCTTTCTCTTTTCAAGAAGTGCCCCAGAGTTACAACTTGGACTACACCTTCAATGAAATCTACAGTTCTTTATTTGATGAATTTTATGCACCCCAGATTGTAGATTCATCTTATAGCACCCTTGATGCTTCACATAGCACCCCTTCATTTGTTCCTCATGAAGATTATCCATTGTCTTTGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAACTTCATTGTTTGGACCTTCAAGCTACATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCTTCTGTGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGAGATTAAACGACAGACTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATTCTTGGAGACACTATTGATTATATGAAAGAGCTCTTGGAAAAGATTAACACTTTGAAGCAAGAAATAGAGGTGGATTCCAACACTGCTACCATTTTCAAGGATTTAAAGCCAAACGAAATCTTAGTAAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGCCAATACAAGGGTGGAGATCTGCTGTGCTGGGAAGCCAGGCTTGCTGCTGTCTACAGTAAACACATTGGAAACACTTGGCCTGGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGCAGAAGAAAATTCTGAGTTCAGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 1131 0.3837 MNNIYHIISNLQQAFHCALINMLQLSTILSQGSISKTISHHTKREREMELYDNDFLEESMALRREPWDTNPCSQENQLFSNAWSFDCFDQNYQAFPSNSFSFQEVPQSYNLDYTFNEIYSSLFDEFYAPQIVDSSYSTLDASHSTPSFVPHEDYPLSLMEEEDPGLLGEELHCLDLQATCKMEPSHSPEMPVFNTDSSVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINTLKQEIEVDSNTATIFKDLKPNEILVRNSPKFDVERRNANTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEQKKILSSEDIKQALFRSAGYGGRCL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1019 376 Coils Coil 256 276 - -
Vra6g1019 376 SMART finulus 216 265 IPR011598 GO:0046983
Vra6g1019 376 Gene3D - 197 274 IPR036638 GO:0046983
Vra6g1019 376 MobiDBLite consensus disorder prediction 184 213 - -
Vra6g1019 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Vra6g1019 376 CDD ACT_UUR-ACR-like 305 346 - -
Vra6g1019 376 Pfam Helix-loop-helix DNA-binding domain 216 259 IPR011598 GO:0046983
Vra6g1019 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 272 IPR036638 GO:0046983
Vra6g1019 376 PANTHER DNA BINDING PROTEIN 50 376 - -
Vra6g1019 376 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 50 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1019 Vra-Chr6 14001276 14003890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1019 201 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.222 2.13e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g1019 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1019 - - vra:106764382 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1019 6 14001276 14003890 Vra6g1019 6 14001276 14003890 ECH