Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1001 ATGGGGGTTTTGTTCAACTTTTATCTCTGTCATTTGATATTCTTCTTCACATTGGTAAACACTTTGATATCCTCCGTTGCTGAGAGTCACATTAACATGGATTCTGATGGAAAAACTGAACAAGTGAAGGACAGGTTTGCTATAAAATACTTTCGAAGAAGGAGAAAACAGATAATAGAGGCAGAAGATAGTAAGTTGATTAAAGAACTATTCTTATTTTGTCATCAATGTCGGATAAAGGTTGGAGGAAAGACTGTGAGGTGCGGAAACTGTAATATGAGAAGATATTGCGTATCATGCATACGAAATTGGTATCCTCATTTGAAAGAGGATGGCATTTTTGAGTCATGTCCCGTGTGCCGAGGAAATTGCAACTGCGTAGCATGCTTGAGATCCGATGTACTTGTTAAAGAAATGAAGCGAAAAGCAAAAACCAAAGAAGATGAACATGTTGAATTCTCTGTGTATTTGCTGCAAACACTTCTTCCACATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAATGAAACAGAAGCTAAGATACAGGGTATCTCAATCTCTGAGCTTAGAGTAAAAGAGGCAGTATATTCTAAGGACGAGCGAGTATATTGTGATAATTGTAAAACGTCAATATTTGATTACCACAGAAGCTGTACACTGTGCACATTCGATCTTTGTCTCAGCTGTTGTCGTGAGCTTCGTAGTGGGCAGCTTTTAGGTGAAGAAGTAATAAATAAAAGGGTAAACCAAACTGAATCAAACGATGTTACTGAACCTGTAGTTCGTGAATGGTCAAGATTTGGATGGCATGCCGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTTAGTGATGAATGTAATCATGGTTTCCTAGAACTGAGAAGCGTGTTAGGTCAAAATTTTCTTACTGATTTATTGTGTAAAGCAAATGAACTAGCACAAAGACACGAACTTGGGACACTTGACAACTTCTGTACGTGTTCAAGGCTTGACAGGAAAACAGATGTTAGATATCATGGTATGAGGAAGGCTGCATCACGTGCATATTCTAGTGACAACTATTTGTACTGTCCTAGGGCTGTACAACCCCAGGATGAGGATTTAGGACATTTTCGGTGGCATTGGAAAAACGGAGAGCCTGTTATTGTTAGCCATGCGATTGATAGTACTACTGGTTTAAGCTGGGAACCATCTGTCATGTCTCGTGCATTGTGTCAGATAGCTAAGAGCAGGCATCCACAACATTTGGATATGAAGGCAATTGATTGCTTAGATTTTTGCGAGGTTCAAATTAAGATCGACGAATTTTTTACTGGGTATAAAGAAGGTCGTGTGGATTGCCTTGGTCGGCCTCGCATGTTGAAATTAAAAGACTGGCCATCTACTAATTTATTAGAAGAATGCTTACCTCGACATTGTGCCGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCATATGGAGGTTGTCTCAACCTAGCTGTGAAATTGCCCGAAGAGTGTCTAAAGCCAGACTTGGGGCCGAAGACATATATTGCCTATGGATTCCTTCATGAGCTTGGATGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACGCATATAGCTGAAGTTAAATTGGAAGTTACTGGCATTGAGAATTTGAAAGAAAAGCAGTTGGAGCAAGACCAAGGGGATGGTTCAGATGGTGCAGTGTGGGATATTTTTCGGAGGCAGGACGTACCTAAATTGCAGGAGTATCTGAGGAAGCATTTCAGAGAGTTTAGTCATATCCATTGCCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTGTGGAGCACAAGAGGAAGCTAAAGGAGGAGTATGGAATTGAGCCCTGGACATTTATTCAGAAGCTAGGAGAAGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTTAGAAATCTCAAGTCGTGTAATAAGGTCGCAATGGATTTTGTTTCTCCTGAAAGTGTTGGGGTGTGTTTTGGTTTAACCGAGGAATTTCGTACACTTCCAATAAATCATGGGTGTGCTGAGGACAAATTGGAGGTGAAAAAGATGACAGTATATGCTATGCAAGATGTGATAAGAAAATTGGAAAGGGCGAGGTTAGCAGACAAGGGATCGGTGAAAGTGTAA 2196 0.4026 MGVLFNFYLCHLIFFFTLVNTLISSVAESHINMDSDGKTEQVKDRFAIKYFRRRRKQIIEAEDSKLIKELFLFCHQCRIKVGGKTVRCGNCNMRRYCVSCIRNWYPHLKEDGIFESCPVCRGNCNCVACLRSDVLVKEMKRKAKTKEDEHVEFSVYLLQTLLPHLRLLDEEQMIENETEAKIQGISISELRVKEAVYSKDERVYCDNCKTSIFDYHRSCTLCTFDLCLSCCRELRSGQLLGEEVINKRVNQTESNDVTEPVVREWSRFGWHAESNGRIPCPKVSDECNHGFLELRSVLGQNFLTDLLCKANELAQRHELGTLDNFCTCSRLDRKTDVRYHGMRKAASRAYSSDNYLYCPRAVQPQDEDLGHFRWHWKNGEPVIVSHAIDSTTGLSWEPSVMSRALCQIAKSRHPQHLDMKAIDCLDFCEVQIKIDEFFTGYKEGRVDCLGRPRMLKLKDWPSTNLLEECLPRHCAEFISSLPFKEYTDPYGGCLNLAVKLPEECLKPDLGPKTYIAYGFLHELGCGDSVTKLHCDMSDAVNVLTHIAEVKLEVTGIENLKEKQLEQDQGDGSDGAVWDIFRRQDVPKLQEYLRKHFREFSHIHCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGEAVFIPAGCPHQVRNLKSCNKVAMDFVSPESVGVCFGLTEEFRTLPINHGCAEDKLEVKKMTVYAMQDVIRKLERARLADKGSVKV* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1001 731 SMART cupin_9 470 688 IPR003347 -
Vra6g1001 731 Pfam JmjC domain, hydroxylase 574 671 IPR003347 -
Vra6g1001 731 Gene3D Cupin 352 697 - -
Vra6g1001 731 ProSiteProfiles JmjC domain profile. 489 688 IPR003347 -
Vra6g1001 731 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 72 136 IPR018866 -
Vra6g1001 731 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 56 720 IPR045109 GO:0032454|GO:0033169
Vra6g1001 731 SUPERFAMILY Clavaminate synthase-like 368 707 - -
Vra6g1001 731 ProSiteProfiles Zinc finger RING-type profile. 74 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1001 Vra-Chr6 12886621 12896540 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra6g1001 JmjC 5.4e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1001 K15601 - mnt:21404458 738.028