Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1000 ATGACAAACCGTAATGTGAATAAGACGATTCTGGAGTTGGCAATGTCGATTTCAAACTCAGGTGCTCTACCTAGAGCTGCAGTGCCTGGAATAATGGCTTTGCTTTGTGGGGTTTTAGGCCTACCCCAGAAAAAGCTGTTTTTGAAAACTTTGGAGGATGGAAGTGGAAAAGGAGGAACCAAAGTTAACACATGGATTGATTCAATGAGAGCTTCTTCTCCCACTCGAGTCAAATCCACACAGAACCAAGACCCCAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAACCTGTTTGATCAGATTGTATGTGAGTCCAAAGGGAAGCAGATTGTCACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATACATGAGTCAAAAGATGAGGGCCACACTGAAGGACATAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCATAGACAAGGTGTATAGCTTTGTGAGATTGGCTGAACTGTACTATGCTGGGAGCCATGGGATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAACGAAGCAGTACTTTTCCAACCCGCTAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGATAAAACAAAGTCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGTTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTTAGCTTGGTCCTCGATCACTACCCCAAACTAAAGCTAACTCAAGGCAGAAAAGTGCTTGAGATTCGACCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAATCACTCGGATATGCTAACTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGGAAGAGGGGTCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAGGAAACCGATGCTTCCTACACTCTGCAAGATCCAACTGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTACCCAATACCACAAGTTGTAG 1110 0.445 MTNRNVNKTILELAMSISNSGALPRAAVPGIMALLCGVLGLPQKKLFLKTLEDGSGKGGTKVNTWIDSMRASSPTRVKSTQNQDPSPWTLYHPSALNLFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSQKMRATLKDIARHFPTAIVSGRCIDKVYSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNEAVLFQPASEFLPMINEVYNILVDKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEQVSLVLDHYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRKRGQGIGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSTQYHKL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1000 369 Pfam Trehalose-phosphatase 114 346 IPR003337 GO:0003824|GO:0005992
Vra6g1000 369 Gene3D - 111 195 IPR023214 -
Vra6g1000 369 Gene3D - 225 368 IPR023214 -
Vra6g1000 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 - -
Vra6g1000 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 114 321 IPR006379 -
Vra6g1000 369 SUPERFAMILY HAD-like 114 360 IPR036412 -
Vra6g1000 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 IPR044651 GO:0004805|GO:0005992
Vra6g1000 369 CDD HAD_TPP 114 350 - -
Vra6g1000 369 TIGRFAM T6PP: trehalose-phosphatase 109 357 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1000 Vra-Chr6 12810730 12813595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1000 107 356 Trehalose Biosynthesis Gene Families AT1G70290 26.592 1.04e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1000 K01087 - gmx:100792915 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1000 6 12810730 12813595 Vra6g1000 6 12810730 12813595 ECH
Vra6g1000 6 12810730 12813595 Vra5g0895 5 15021245 15023917 PCT