Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0996 ATGGCAGCTACGATGGATTTGTACAACGGACAACCACAAGTTCAGTCGGATCCATTCAGAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTTTATCTTCAGCAGATTCAGCTTTACCTTCAACATCGACTTCTACTTCATATTCCTACTCTCCTTCCCCTCTCTCACTCCCTCCACACCCTAGTTTCTACTCAGACCCTTCCTCCTCCTACCTATTCCAAACCCAGACCCTAATAGGCTTTGAGCAGCAACCCGGTTCTGTTCTCGGGCTCAACCACCTAAGCCCGTTTCAGGTTTCTCAGATCCAGGCTCAGATGCAGGCTCATAGCCAGACCTCCCTCTCCCTCAACTTCCTGGGCCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGACCTCCGAAGCCCACCAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAGAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCCTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTCAAGGGGTCTTGCCTCGGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGGCATCATCCAAGAAGTCAAAAGCAGCTCGGAATTCGAACCAGGATCCCAACCCGAACCTTGTTTGCAAGGCCGAGCCCGAACTTGAACTTGAACCCGAAGCCGAACCTGTTCTGTCTCCTGAAAGTGATGGTTCTGTGGATTCTTCTCCGCTATCTGATCTCACCTTTGATGTCAGCGAGCCGCAATGGGAAGATGCTTCTGCGTATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA 993 0.5358 MAATMDLYNGQPQVQSDPFRGELMEVLEPFMKSPSTTPSLSSADSALPSTSTSTSYSYSPSPLSLPPHPSFYSDPSSSYLFQTQTLIGFEQQPGSVLGLNHLSPFQVSQIQAQMQAHSQTSLSLNFLGPKPVAMKQVGGPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCLGEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARASSKKSKAARNSNQDPNPNLVCKAEPELELEPEAEPVLSPESDGSVDSSPLSDLTFDVSEPQWEDASAYFNLQKFPSYEIDWDSL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0996 330 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677
Vra6g0996 330 MobiDBLite consensus disorder prediction 236 303 - -
Vra6g0996 330 MobiDBLite consensus disorder prediction 250 264 - -
Vra6g0996 330 CDD AP2 145 205 IPR001471 GO:0003700|GO:0006355
Vra6g0996 330 Gene3D AP2/ERF domain 146 204 IPR036955 GO:0003700|GO:0006355
Vra6g0996 330 MobiDBLite consensus disorder prediction 287 301 - -
Vra6g0996 330 MobiDBLite consensus disorder prediction 32 61 - -
Vra6g0996 330 Pfam AP2 domain 147 195 IPR001471 GO:0003700|GO:0006355
Vra6g0996 330 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Vra6g0996 330 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Vra6g0996 330 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700|GO:0006355
Vra6g0996 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 329 - -
Vra6g0996 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 329 - -
Vra6g0996 330 SMART rav1_2 146 209 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0996 Vra-Chr6 12636785 12638648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0996 1 330 AP2-EREBP Transcription Factor Family AT1G78080 49.577 1.08e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g0996 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0996 K09286 - gmx:100802961 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0996 6 12636785 12638648 Vra6g0996 6 12636785 12638648 ECH
Vra6g0996 6 12636785 12638648 Vra5g0897 5 15050865 15052807 PCT