Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0987 ATGAATGAGGAATTAAATACCGATGATGAGAGTAGTTTGAGGTTGGTTCCTACTTTGAACATGTGTTTTGACACAATGCAAGAAGCAAAGAAATTTTATCAAGACTATGGGAGAAGATGTGGATTTGGCATTCGATCCAAAACTTCAAAAAAGGATGGAAACAACGTGGTGTATTACTTGAGATTGGTTTGTTCTAGGGAAGGTAAATATGTTTCCAACATTCGTCCAGAGGTCAAAACTCTTCCCAGTCAGACTAATCAATGCCCTACTAGAATAACCATTGCACGAAAAGAGGAGAAATGGTTTGTTAGGACTGTAGTTTTAGATCACAGTCATGACCTGTGTCCACAAACCTCCAATCTAATCCGTGGTAATAAGCAATTGAACATGCATGCCAAGCACACTTTGGAAGTGAATGATGATGTCAGTGTTCGTATTAATAAGAGTTTCCTTAGCATAGTTAGTGAAGCGGGTGGATATGAAAACATGCAATTTGTGGAGCGAGATGCTAGAAACTTCATTGGTCAACATAGAAGGTCACTGTGTAAGGAAGGTGATGGACAAGCATTGCTTCGACACTTTTCAAAAATGAGAGACCAGAATAATGATTTCTTCTATGATATCGAGATGGATGAAGATAATAGAATTACTAGTGTATTTTGGGCAGATGCTCGAAGCTGA 681 0.3847 MNEELNTDDESSLRLVPTLNMCFDTMQEAKKFYQDYGRRCGFGIRSKTSKKDGNNVVYYLRLVCSREGKYVSNIRPEVKTLPSQTNQCPTRITIARKEEKWFVRTVVLDHSHDLCPQTSNLIRGNKQLNMHAKHTLEVNDDVSVRINKSFLSIVSEAGGYENMQFVERDARNFIGQHRRSLCKEGDGQALLRHFSKMRDQNNDFFYDIEMDEDNRITSVFWADARS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0987 226 Pfam FAR1 DNA-binding domain 31 115 IPR004330 -
Vra6g0987 226 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 226 IPR031052 GO:0006355
Vra6g0987 226 PANTHER OS03G0843700 PROTEIN 8 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0987 Vra-Chr6 11712943 11713623 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra6g0987 FAR1 1.2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0987 - - vra:106770395 437.573