Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0986 ATGTCCTCAATGGGTGGTTCAGCTGATGAAAATCTTGAAACAAAAGAGACACATGTGAGAAGTCTGTCATCTTCACATGGTCAGGAACCTTATGTCCACAAGGTTGGAATTCCTCCGCGGCAAAACCTTTTCAGGGAATTCCAATCCACTGTAAAAGAAACATTTTTCGCAGATGATCCACTACGGTCGTTCAAGGATCAAACTAAGTCCCGGAAGCTGATCCTTGGCATTGAGGCCATATTCCCCATACTTAGTTGGGGGCGAACCTATAATCTCGCAAAACTTAGAGGAGATCTCATTGCTGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATATGCAAAGCTTGCAAATTTAGATCCAGAGTACGGATTATACTCCAGCTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGTTCTCGTGACATTGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACATTACTTCAGAGTGAGATTGATCCTATCGCTAACCCAATAGACTATCGAAGACTTGCTTTTACTGCCACTTTCTTTGCGGGGATTACTCAAGCAACACTTGGGGTTTTAAGATTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTTGGCTTTATGGGGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAGGGGTTCCTTGGGATTCAGAAGTTCACAAAGAAAACTGATGTTATCTCTGTGATGTACTCAGTTCTGTCATCAGCCCATCATGGTTGGAATTGGCAAACTATAGTAATTGGAGCTGTTTTTCTGGCTCTTCTTCTGTTTGCCAAGTATATTGGAAAGAAGAACACGAGATTCTTCTGGGTGCCAGCAATTGCCCCGTTGATATCTGTTATTCTCTCTACTTTTTTTGTATACTTAACAGGTGCAGACAAGCATGGTGTTGCAATTGTAAAACACATAAACAGTGGCATCAATCCTTCATCTGTGAAGGAAATTTATTTTACTGGTGATTACCTTGGGAAAGGTTTCAGAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCTACAGCAATTGGAAGAACATTTGCTTCCATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTGGGTGCTATGAATGTTGTTGGTTCATTCACTTCCTGTTATGTGGCAACCGGTTCTTTCTCTAGGTCAGCAGTAAACTACATGGCTGGCTGCGAAACTGCAGTATCTAATATCGTCATGTCTGTTGTTGTGTTCTTAACCTTGGAATTCCTCACACCTCTTTTCGAATACACTCCAAATGCCATTCTTGCTACAATCATTATTTCTGCTGTCATCAACCTTGTGGACTATAAAGCAGCGATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGAGTTGTTTTTGCCTCAGTTGAGATAGGACTTTTAATTGCAGTCTCTATATCCTTTGCAAAGATCCTATTACAAGTTACTAGGCCACGAACTGCAATTCTGGGGAAGATCCCTAGGACTACAGTCTATAGAAACATCCAACAATACCCTGAAGCCACAAGGGTTCCTGGTGTACTCATCATCAGAGTTGATTCTGCAATATATTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGCTGATGGATGAGGAAGAACAAGTGAAAGTAGACTACCAAACAAGAATCCAATTTTTGATGGTAGAGATGTCACCTGTCACTGACATAGACACAAGCGGCATCCATGCACTTGAAGAATTATTTAGAAGTCTTCAGAAAAGAGATGTTCAGCTTGTTCTGGCAAACCCTGGGCCAATAGTAATAGACAAGCTACACACATCAAACTTTGCTGCTTTGCTTGGTGAAGACAAGATCTTCCTCACTGTTGCAGAGGCTGTTGCATACTGTTCTCCAAAGTTGGCTGAGGACCCTTGA 1977 0.4163 MSSMGGSADENLETKETHVRSLSSSHGQEPYVHKVGIPPRQNLFREFQSTVKETFFADDPLRSFKDQTKSRKLILGIEAIFPILSWGRTYNLAKLRGDLIAGLTIASLCIPQDIGYAKLANLDPEYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQSEIDPIANPIDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDVISVMYSVLSSAHHGWNWQTIVIGAVFLALLLFAKYIGKKNTRFFWVPAIAPLISVILSTFFVYLTGADKHGVAIVKHINSGINPSSVKEIYFTGDYLGKGFRIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSFTSCYVATGSFSRSAVNYMAGCETAVSNIVMSVVVFLTLEFLTPLFEYTPNAILATIIISAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEEQVKVDYQTRIQFLMVEMSPVTDIDTSGIHALEELFRSLQKRDVQLVLANPGPIVIDKLHTSNFAALLGEDKIFLTVAEAVAYCSPKLAEDP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0986 658 Gene3D STAS domain 507 654 IPR036513 -
Vra6g0986 658 PANTHER SULFATE TRANSPORTER 15 658 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra6g0986 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Vra6g0986 658 Pfam STAS domain 528 646 IPR002645 -
Vra6g0986 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Vra6g0986 658 TIGRFAM sulP: sulfate permease 82 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra6g0986 658 MobiDBLite consensus disorder prediction 1 33 - -
Vra6g0986 658 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 15 658 - -
Vra6g0986 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Vra6g0986 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016021
Vra6g0986 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0986 Vra-Chr6 11686125 11693592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0986 1 657 Inorganic Solute Cotransporters AT1G22150 76.104 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0986 K17470 - gmx:100797668 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0986 6 11686125 11693592 Vra6g0986 6 11686125 11693592 ECH
Vra6g0986 6 11686125 11693592 Vra5g0912 5 15292841 15299713 PCT