Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0980 ATGATTACAGAGCACAAGTACGAGATTGTGAAACGTTTGCAAGCTAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGACGCACCTGCACTCAAGAAGGCCGGCATTGGTATAGTTGTTGCTGACGCAACTGATGCAGCTCGGAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTTTCATTATTGTATTAGTGAATGTTGCTCCTGAAAAGAGAATAAAATATTAG 246 0.4024 MITEHKYEIVKRLQARKHICGMTGDGVNDAPALKKAGIGIVVADATDAARSASDIVLTEPGLSVIFIIVLVNVAPEKRIKY* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0980 81 SUPERFAMILY HAD-like 3 69 IPR036412 -
Vra6g0980 81 PANTHER PLASMA MEMBRANE ATPASE 3 80 - -
Vra6g0980 81 Gene3D - 2 60 IPR023214 -
Vra6g0980 81 Pfam haloacid dehalogenase-like hydrolase 4 37 - -
Vra6g0980 81 PANTHER CALCIUM-TRANSPORTING ATPASE 3 80 - -
Vra6g0980 81 PRINTS H+-transporting ATPase (proton pump) signature 23 39 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra6g0980 81 PRINTS H+-transporting ATPase (proton pump) signature 54 79 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra6g0980 81 PRINTS P-type cation-transporting ATPase superfamily signature 23 42 - -
Vra6g0980 81 PRINTS P-type cation-transporting ATPase superfamily signature 46 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0980 Vra-Chr6 11247769 11248507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0980 4 80 Primary Pumps ATPases AT3G47950 84.416 7.42e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0980 K01535 - vra:106763428 151.369