Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0979 ATGGAAGCATATCCAAACGCGGCCTCCATGCTGAGAAGCAGAACCATAATACCTCCACCATTGCTCGCCCTCACTGCAAGGCTTCCGTCACCCTCACCATTATTGCCGCCCTCCTTTACCCTCTCCGAACCCACACTATCGTGTTCTGCAACCCCGAAACCCTCGCTCCGCAGTTTTTCTCTCTTCTCCAATTCTCACGCTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCAATTCCGGACCCACCCAGATCAGAACCCGAACCCGATTCCCCTCTCGTGGTGGTATCCTTCTACAAATTCGCGGATTTTCCTGATCATGCTCTCATGCGAAACCCCTTGAAGCAACTCTGTCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATCTGTGGGACTCGGGAGTCAGTTGAGGCTGTTCTGGCTTTTGTCGAAGGTGATGATCGACTGAAGGGGCTAAGGCGAGTGGAATCACCTGTTGGTCCTGAGGAGGAGGCCATCCATCATGGTCATAGTGCTGCTTCTCCGCTTGCTGCTGGGGAAGATGCACCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGGATGCCTACTGTGTCACCTATTGAAAGGGTTGGAAAGTATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAAGAGCATTTCCAGCTTAGCAAAACAGACGATGGTGAGAATCCAAAAGTTGAGGCAAACAATTCAGTCCAATCTGCTGATAAAGAAATGGAGAATCAAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAGAGAGGTTTATCACCTGGAAGGTGGAATTCTAAAATATCTTGAAGATGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAGTGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCAGACAAGGGTCGCCGCCCAACTACTCAAGAACCGGAAAGTGTTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA 1410 0.4787 MEAYPNAASMLRSRTIIPPPLLALTARLPSPSPLLPPSFTLSEPTLSCSATPKPSLRSFSLFSNSHALQTMTLSKCFSHIGPTVPIPDPPRSEPEPDSPLVVVSFYKFADFPDHALMRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEAVLAFVEGDDRLKGLRRVESPVGPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEEHFQLSKTDDGENPKVEANNSVQSADKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFREVYHLEGGILKYLEDVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTQEPESVSRNPNQLSRSI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0979 469 Pfam Rhodanese-like domain 234 356 IPR001763 -
Vra6g0979 469 MobiDBLite consensus disorder prediction 288 311 - -
Vra6g0979 469 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 97 449 - -
Vra6g0979 469 Coils Coil 295 315 - -
Vra6g0979 469 CDD RHOD_YceA 228 356 - -
Vra6g0979 469 Pfam UPF0176 acylphosphatase like domain 101 213 IPR040503 -
Vra6g0979 469 ProSiteProfiles Rhodanese domain profile. 241 363 IPR001763 -
Vra6g0979 469 SMART rhod_4 231 360 IPR001763 -
Vra6g0979 469 Gene3D - 215 396 IPR036873 -
Vra6g0979 469 Gene3D - 91 214 - -
Vra6g0979 469 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 97 449 IPR020936 -
Vra6g0979 469 MobiDBLite consensus disorder prediction 454 469 - -
Vra6g0979 469 Hamap tRNA uridine(34) hydroxylase [trhO]. 98 400 IPR020936 -
Vra6g0979 469 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 210 389 IPR036873 -
Vra6g0979 469 MobiDBLite consensus disorder prediction 428 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0979 Vra-Chr6 11156421 11161016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0979 100 469 Sulfurtransferasese or Rhodanese AT2G40760 74.462 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0979 - - gmx:100784854 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0979 6 11156421 11161016 Vra6g0979 6 11156421 11161016 ECH