Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0977 ATGGGTAGGCGAAAAAGCAAACCTCATCGAGCAGGTGGGATAATACTAGACCCAGATGCTTCTGCCGAGACGGAATTGAATAAACAAAATGTTGTAGAAGGAGGGGAAGCAGCAAAAGGTAGTTCTGGTGGCATTGATAAGCCTTATTTTGTGGAGGTTGTTCGGTTGGATTGGTTGTCGGGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAAATTGAGTGAAGGTTTTTCTGGTTTTGAGTTGGCTGAGGATTTTTGTCGGGATCAGCAGTACTTGTTAAGATTTCGAGTATGTAACGTAAGTAATGTTCTTAGTCGAATTAAATTAGGTCATTGGCCTGTGTTACCCTATACTGATATTCATCTGGAGTTTGCAAGAAGAGTTACCGTTGACCATGAGGAAACATATACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGAAGGTGTTACTGGTCTTCTCCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGGTTGGGCTTTCTGGGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAACGCCTTCAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTCTATAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAGGTCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGATTGAAGATGACATACCAGAGTTACTTCCTAAACTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCACTATGCATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCACCGTAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGAGCCACAAATTAACGGGGACCAAAAAGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTATTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACAGTGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAGTCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCTGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCATCAGGGCTCCTTGAAAACTTGTGTCTATGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTGACTACATATGATGTGCTTAAAGAGGATCTGTCTCACGATTCTGATAGGCATGAAGGTGATCGGCACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTGCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAGTACTACAGCTTCCACTGAAATGGCTCTAAGGCTCCATTCAAAGTATCGATGGTGTATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTCCTTGTAGCCAGTCCTTTTGATACATACAGGTGGTGGACTGATGTTATTAGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAATTTGCACACAATGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCTGATGAATTGGACCTTCCATCCCAAGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCTCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCAAGATTCTATCTCTTTGCAAAGCTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAGCAGACACCAATGACGATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAAATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAAAATGATTTTTCTCAAGCTACATCACTGTACGGTGAAGCTCTGGCTTTGGCTAGAGAACACGCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATACATCATAATCTTGCTGAAATACTTCCACTTGCTTCAAACTTTGCTTTAACATTGGCATCCAAAGGAAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTTTAAAGGCTGACAGTTGTCATGTGAAGAGGCAAAGAATAAGTGGTTGTGATGACATAAATGCAACCGTGCCATCTGCAGAACCATCAAATGGTAGCCTTTTGGAAAATGACATAAAGGAGGATCAGGAATTTGATAATTTAGCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATTCTTGTCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTGAAAGTTCTTATGTTCAGGTCGGTAATGCTTACCGTGACAGTCGAACATATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAGCAAAGATTTCTCCTCTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCGCTCTTAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAGGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTCTGACGGTCCCCCATGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTACGAAGCAAGACTCTTCGTTCTTAAGAACGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTGCAACATCTGATATCGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAAGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACCTAAAGGGTTTAGTTCAATCCAAGCAAAAAAAGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGGAGAAAGAACTGCAATGTCAAACTATACAGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTCACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAAGCTTCCAATCTTTCAGTGCTGCATGCAATTGACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGATACAAAAGGATGTGAGGGGTCAACACCAGAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTTGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTTCATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTTATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCTCTTACAGTGCCAGAAAGTGAAGAAAATCCTAGCACAAACACAAATCTAAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAACGGACATGA 5010 0.4096 MGRRKSKPHRAGGIILDPDASAETELNKQNVVEGGEAAKGSSGGIDKPYFVEVVRLDWLSGEHLDISEVVLRDLKLSEGFSGFELAEDFCRDQQYLLRFRVCNVSNVLSRIKLGHWPVLPYTDIHLEFARRVTVDHEETYTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVLGVGLSGEISSLRVRVEVLKNAFNACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFYSCMKMDGDPQTEMVDDTCRSRKHARFDPAGLYEAIKPSKAEPMIEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDILFDLEPQINGDQKVTLKRVKRDRVECICGAVSESIKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTVAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESSTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDTYRWWTDVIRDPYEKGDVGAMEFAHNVFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGQDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQNDFSQATSLYGEALALAREHAEDFRLDPLLNIHIHHNLAEILPLASNFALTLASKGKQLSESSEFKMTKRHLILKADSCHVKRQRISGCDDINATVPSAEPSNGSLLENDIKEDQEFDNLAASSVKSLIAECEDSKQKFLSVFSSKLSAAQQEFESSYVQVGNAYRDSRTYQNTFWWLEALHHAEQSKDFSSELIRKIEEAISGTSSNSKSSRITARFRSISALKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNSDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSATSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKKQFESPNGSSISGERTAMSNYTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNEASNLSVLHAIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHSFTANNITFIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTVPESEENPSTNTNLRHLPPSVAAAIAAEKRLNEQRT* 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0977 1669 SMART ring_2 1356 1403 IPR001841 -
Vra6g0977 1669 Coils Coil 1067 1087 - -
Vra6g0977 1669 CDD SF2_C_SNF 1447 1584 - -
Vra6g0977 1669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1650 - -
Vra6g0977 1669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1624 IPR001650 -
Vra6g0977 1669 SMART helicmild6 1481 1573 IPR001650 -
Vra6g0977 1669 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Vra6g0977 1669 CDD PHD_TCF19_like 416 460 - -
Vra6g0977 1669 SUPERFAMILY RING/U-box 1349 1408 - -
Vra6g0977 1669 Pfam Helicase conserved C-terminal domain 1451 1573 IPR001650 -
Vra6g0977 1669 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Vra6g0977 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 681 IPR027417 -
Vra6g0977 1669 Gene3D - 1408 1655 IPR027417 -
Vra6g0977 1669 CDD DEXQc_SHPRH 289 688 - -
Vra6g0977 1669 SMART PHD_3 414 482 IPR001965 -
Vra6g0977 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 480 IPR013083 -
Vra6g0977 1669 Gene3D - 481 709 IPR038718 -
Vra6g0977 1669 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Vra6g0977 1669 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Vra6g0977 1669 Gene3D - 345 397 IPR038718 -
Vra6g0977 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1624 IPR027417 -
Vra6g0977 1669 SMART ultradead3 285 658 IPR014001 -
Vra6g0977 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1329 1407 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0977 Vra-Chr6 11128185 11152816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0977 489 782 RAD5 or RAD16-like Gene Family AT5G22750 32.107 1.00e-35 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra6g0977 SNF2_N 7.7e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0977 K15710 - gmx:100776659 2932.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0977 6 11128185 11152816 Vra6g0977 6 11128185 11152816 ECH