Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0972 ATGGTTTCTTCCCAATTCTCTGTCTTAAATGAAGATAGTTCGCCAAACTCTTTCCTGAACCAGTTGGTTCTACCAAATGGACCACCTGATCTTTTGCTTTCTTCGAATTCTGAGGACTTTGAATTTTCTGATGTTTTTGGTGCATCTCCTGTTGAAGCCTCAATAACAGCAAGCTCCGAGAAACATGGAGATTCCACACCTACACGAGATTCTGGTGGAAAGATTTGCAATGATCCTGATTGCATCAACATCCGCTCTCAATCTTTATTTGCTCCCACAACTTGTATTGGTCAGTCCTTGCAGCTGAGAAAGCTCAACTTACATGAGACAGAAGATGAATTAGACCTTGTGGAGGTCTTAACAGAAGCACAGGAAAAACTTGAACATTCTGTTAACAATGCAGCAGCAGAGAAAACTAATTTAAACTTCAATGATTACTGTCTGAATAATCAGATTATTGGAGTTGAGGATTTTGAACTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGAAAGGTGTACCAGGTGAGGAGGGCAGGTACTTCTGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATCATAGAGAGAAACCATGCTGAATATGTAAAGTCTGAAAGGGATATACTAACAAAGGTGGACAACCCATTTGTTGTGCGGCTCAGATACGCTTTCCAAACCAAATATAGGTTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTCTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCCGCAGAGATTATTTGTGCCGTTTCTTATCTTCATGCAAATGATGTAATGCACAGGGATCTTAAGCCTGAAAACATTCTTCTCGATGCAGATGGTCATGCTGTGTTAACAGATTTTGGCCTGGCTAAGCAATTCAATGGCACTGAAAGATCAAATTCTATGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTAATGGGGAAAGGTCATGATAAGGCTGCTGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACCGGAAAGCCTCCCTTCTGCGGCGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCGGCATTTTTGTCAAATGAGGCACATTCACTGTTAAAAGGGCTGTTGCAGAAAGATGTCAGCAAACGTCTTGGCAGTGGATCAAGAAGCGGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCTGTGAACTGGAATAAACTGGAAGCCCGTGAAGTCAGGCCAAGCTTTGTGCCAGATGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGCGGTGGACTAGTATGCCTTTGCTGGATTCTCCAGCTTCTACTCCCAAAAAGGATGACACTACCTTCAGCAAGTTCTCATATACTGGTGCTCCAGTTCAGTAA 1440 0.4236 MVSSQFSVLNEDSSPNSFLNQLVLPNGPPDLLLSSNSEDFEFSDVFGASPVEASITASSEKHGDSTPTRDSGGKICNDPDCINIRSQSLFAPTTCIGQSLQLRKLNLHETEDELDLVEVLTEAQEKLEHSVNNAAAEKTNLNFNDYCLNNQIIGVEDFELLKVVGQGAFGKVYQVRRAGTSEIYAMKVMRKDKIIERNHAEYVKSERDILTKVDNPFVVRLRYAFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHANDVMHRDLKPENILLDADGHAVLTDFGLAKQFNGTERSNSMCGTVEYMAPEIVMGKGHDKAADWWSVGILLYEMLTGKPPFCGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDVSKRLGSGSRSGEEIKSHKWFKSVNWNKLEAREVRPSFVPDVAGKHCVANFEERWTSMPLLDSPASTPKKDDTTFSKFSYTGAPVQ* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0972 479 Pfam Protein kinase domain 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0972 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vra6g0972 479 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 475 - -
Vra6g0972 479 ProSiteProfiles Protein kinase domain profile. 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0972 479 MobiDBLite consensus disorder prediction 453 479 - -
Vra6g0972 479 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 475 - -
Vra6g0972 479 SMART pkinase_C_6 415 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra6g0972 479 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra6g0972 479 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Vra6g0972 479 SUPERFAMILY Protein kinase-like (PK-like) 155 464 IPR011009 -
Vra6g0972 479 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Vra6g0972 479 Gene3D Phosphorylase Kinase; domain 1 156 457 - -
Vra6g0972 479 SMART serkin_6 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0972 479 CDD STKc_AGC 164 414 IPR045270 GO:0004674|GO:0005524
Vra6g0972 479 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0972 Vra-Chr6 10946549 10950502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0972 1 477 AGC Kinase Gene Family AT3G08720 61.203 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vra6g0972 Pkinase 2.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0972 K04688 - gmx:100803509 778.859