Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0971 ATGGCCACCGACCGTGGTGTCCTCTCAGCACTTGACAAAGCCAAGACACAAAGATATCACTACAAGGCAATTGGGATAGCGGGTATGGGGTTCTTCACTGATGCATATGATCTCTTTTGCATCACTGCACTTATCAAGCTCATAGGTCGCCTGTACTACTATGACCCCATGAGAAACAGTCCAGGGAAGCTTCCAAAGCATGTAAGCAATGCAATAGCAGGAGTTGCATTGTGTGGCACCCTTTCAGGGCAGCTCTTCTTTGGCTGGCTGGGTGACAAACTCGGCCGAAAAAAGGTTTATGGCATCACCCTTTCCACCATGGTGGGGTGTGCCTTGGCATCAGGGCTTTCTTTTGGCTCCACAGCCAAAAGTGTGGTTGCTAGTCTTTGCTTCTTCAGGTTTTGGCTAGGATTTGGCATAGGAGGAGACTATCCTCTCTCAGCTGTTATAATGTCTGAATATGCCAATCAGAAGACTAGGGGAGCTTTTGTTGCTTCTGTTTTTGCTATGCAAGGAGTGGGAATATTGTTTGCTGGAGGTGTATCCATGTTGGTCTCCAAACTGTTCCTATTAGCTTATCCAGCCAGCGCTTTTGCAGTTGATCCAGTGCAATCTACTCAGCCACAAGGAGACTTTGTTTGGAGAATAGTGCTAATGTTTGGTGCATTTCCTGCTGCCTTCACTTATTACTGGAGAATGAAAATGCCAGAAACTGCAAGGTACACTGCCTTAGTGGAAGGAAATCACAAGAAAGCGGTTGAAGATATGGCTAAAGTTCTTGAAAACGATATACCTTTAGAAGAATCAAATACCAGGGTTACTGCCACACCTAGCCTCTCTTATGGATTCTTCTCTTCAAAGTTTCTTGAGAAGCACGGCCTTCACCTTCTAGGAACAACCAGCACCTGGTTCTTCTTGGATATTGCCTTGTACAGTCTTCAGCTAGCACAAAAAGATATTTACCATGCAAGTGGATTTTTACCCGGTGCTTCCCAAATGAATGCCATAGAGGAGGTGTTTTTACTCTCCAAAGCAATGTTTGCAGTGGCACTGTTTGCCACTGTCCCTGGATACTGGTGCACAGTGTACTTCATTGACAAGATTGGAAGGTACAAAATCCAACTTGGCGGATTTTTTGCTATGTCTGTTTGCATGTTGATTTTGGGACTCAATTATCCAGAATATAGGGGAAATGAATGCAACCCAGATGAAACATATGATTATTGTGGTGGCAAACACACCCTCTTTGTCATTCTTTTCGAAGTCACCCTTTTCTTTGCAAACTTTGGACCCAATAGCACAACATTTATAGTGCCAGCAGAGCTGTTCCCTGCCAGGTTCCGTTCAACATGCTATGGGATATCAGCAGCAGCTGGTAAAGCAGGAGCTATCATTGGTGCTTTTGTTGTACAAAGCTATACAAGTAATCCGCAAGACGAACCAGAAGGTATCAAGACTGCACTTATGGCACTTTCAGTTGTGAATATGCTAGGATTCCTCTGCACTTTCTTATTGCCAGAAACACGAGACCGGTCACTTGAAGAAATCTCTGGAGAAGATAAAGAACTCACTGGCAATATTGCTCAAGACAATGCAAACGATAAAACAACTGATACAGAAAAGGAAACCAAAAACTCTAACGCTGATATAAGTCCAGCAAACTCAGTGGTTTAG 1674 0.4397 MATDRGVLSALDKAKTQRYHYKAIGIAGMGFFTDAYDLFCITALIKLIGRLYYYDPMRNSPGKLPKHVSNAIAGVALCGTLSGQLFFGWLGDKLGRKKVYGITLSTMVGCALASGLSFGSTAKSVVASLCFFRFWLGFGIGGDYPLSAVIMSEYANQKTRGAFVASVFAMQGVGILFAGGVSMLVSKLFLLAYPASAFAVDPVQSTQPQGDFVWRIVLMFGAFPAAFTYYWRMKMPETARYTALVEGNHKKAVEDMAKVLENDIPLEESNTRVTATPSLSYGFFSSKFLEKHGLHLLGTTSTWFFLDIALYSLQLAQKDIYHASGFLPGASQMNAIEEVFLLSKAMFAVALFATVPGYWCTVYFIDKIGRYKIQLGGFFAMSVCMLILGLNYPEYRGNECNPDETYDYCGGKHTLFVILFEVTLFFANFGPNSTTFIVPAELFPARFRSTCYGISAAAGKAGAIIGAFVVQSYTSNPQDEPEGIKTALMALSVVNMLGFLCTFLLPETRDRSLEEISGEDKELTGNIAQDNANDKTTDTEKETKNSNADISPANSVV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0971 557 PANTHER PHOSPHATE TRANSPORTER 6 532 - -
Vra6g0971 557 SUPERFAMILY MFS general substrate transporter 10 518 IPR036259 -
Vra6g0971 557 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 510 IPR020846 GO:0022857
Vra6g0971 557 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 532 - -
Vra6g0971 557 Pfam Sugar (and other) transporter 29 517 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra6g0971 557 Gene3D MFS general substrate transporter like domains 19 534 IPR036259 -
Vra6g0971 557 MobiDBLite consensus disorder prediction 515 557 - -
Vra6g0971 557 CDD MFS_PhT 24 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0971 Vra-Chr6 10943936 10946444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0971 6 519 Inorganic Solute Cotransporters AT5G43350 60.994 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0971 K08176 - gmx:100820250 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0971 6 10943936 10946444 Vra6g0971 6 10943936 10946444 ECH