Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0970 ATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTATGCTAAGCTTCATAGTGTCTCTGTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGACAAGCTCTGCTTGAGTTCTTCTCAAATGTTCCACACTCCCCAAGGTTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCATCTTCCAGGGGCAGGTTTCCAGGGCTTCATTCCAGAGAATAGCCTGGGTAAACTAGATTCTCTTAAAATTCTGAGCCTTCATTCCAATGGCCTCAGAGGAAACCTTCCGTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCAGGTCTAATCCCTTCTTCCCTCTCCCCTAAACTCATAGCATTAGACATTTCCTCTAATAATTTCTCTGGAAGTATCCCACCTATCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAAGTATCCGTACACTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGCTCTGCAGTCTCCACTCCATCTTCATTTTCTTCCTCCATTTCTCCTTCTCCTGTTCATCAACCACTCTCTCCAGAAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGGCAATTGGGGGCTGTGCATTCCTCTCTCTCCTGGTTTTGGTGATGTTTGTATGCTGTTTAAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGCGTTCTGGAAAGACTGAGGTTTCAAAGAGTTTCGGAAGTGGGGTGCAAGAGGTTGAAAAAAACAGGTTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGTTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCCAATGTTCTGCCCCTTCGAGCCTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGGAACAGAGGAATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGTTGCAAAGGGGATTGCTTCCATTCACACCGACCACATGGATTCAAAATTTACTCATGGCAACATCAAGTCCTCTAATGTGCTCATAACCCAAGAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGACCTCCCAATCAACCATGTCAAAAGCCAATGGCTACCGTGCTCCCGAAGTAACCGAGTACAGGAGAATCACTCAGAAGTCTGATATTTATAGCTTTGGAGTGCTCCTTCTTGAAATGCTCACTGGCAAGGCTCCAATAGGATATCCTGGCTATGAGGACATGGTTGACCTTCCAAGATGGGTGAGGTCTGTGGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATGAGGAGCTGCTTAGAGGGCAGTATTTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCTAAGGTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAATAACCATAACACATCATCTGAGTCTGACTCTAATCTACAAACTCCATAA 1935 0.4372 MKFQFRAVSFVMLSFIVSLFGLIVADLNSDRQALLEFFSNVPHSPRLNWSESTPICTSWAGVTCNQNETSVISIHLPGAGFQGFIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSLSPKLIALDISSNNFSGSIPPIFQNLSRLTWLYLQNNSLSGAIPDFNFTSLKYLNLSYNNLNGSIPKSINKYPYTSFAGNSHLCGPPLNNCSAVSTPSSFSSSISPSPVHQPLSPEAAPQNRSATTSKSYFGLASILALAIGGCAFLSLLVLVMFVCCLKNKSQSSGILTGKAPRSGKTEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAVLEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGMGRAPLDWDSRMKIALGVAKGIASIHTDHMDSKFTHGNIKSSNVLITQEHDGCITDVGLTPMMTSQSTMSKANGYRAPEVTEYRRITQKSDIYSFGVLLLEMLTGKAPIGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPTMDETVRNIEEIRLPELNNHNTSSESDSNLQTP* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0970 644 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Vra6g0970 644 SUPERFAMILY L domain-like 40 225 - -
Vra6g0970 644 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vra6g0970 644 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Vra6g0970 644 PANTHER LRR RECEPTOR-LIKE KINASE 5 644 - -
Vra6g0970 644 MobiDBLite consensus disorder prediction 239 258 - -
Vra6g0970 644 SUPERFAMILY Protein kinase-like (PK-like) 355 619 IPR011009 -
Vra6g0970 644 Pfam Protein kinase domain 355 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0970 644 ProSiteProfiles Protein kinase domain profile. 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0970 644 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Vra6g0970 644 Gene3D Phosphorylase Kinase; domain 1 317 426 - -
Vra6g0970 644 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Vra6g0970 644 ProSitePatterns Protein kinases ATP-binding region signature. 357 388 IPR017441 GO:0005524
Vra6g0970 644 PANTHER OS05G0588300 PROTEIN 5 644 - -
Vra6g0970 644 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0970 Vra-Chr6 10934367 10938545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0970 5 642 Receptor kinase-like Gene Family AT5G58300 55.901 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0970 Pkinase 3.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0970 - - gmx:100775340 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0970 6 10934367 10938545 Vra5g0630 5 9603514 9607864 PCT