Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0959 ATGGGAGAGCTTACTTACTTTCTTGGTCTTCAAGTCAAGAGCGCTAAAAATGGAATTTTCATTCACCAATCCAAGTATTGTACTCATTTGTTGAAGAAATTCAGAATGTTGGGCTGCAAGGAGGCAGCAACTCCCATGGCAACAAATTGCTACCTGGATCTTGATAAAGCTGGTAAAGACGTTGATCAAAAGATGTACAGAGAGGCTCAGGAGAAAGTTACTAACCCGCTTTTCGAGAAACGTCCGAAGCAGTTCGGAATCGGAGGAGTGTTGCCGCCGAAGAGAGACTTGACTCGGTTCGTCAAGTGGCCCAAGACCGTTCAAATTCAGAGGAAGAAAAGGATTCTGAAGCAGAGGTTGAAGGTTCCTCTAGCTTTGAACCATATTACGAAGACACTCAACAAAAACCTAGGTCAGACAAATTTCTATAGTGTTGGATCTGATATAAATATTGTTGTTATGTGA 465 0.4215 MGELTYFLGLQVKSAKNGIFIHQSKYCTHLLKKFRMLGCKEAATPMATNCYLDLDKAGKDVDQKMYREAQEKVTNPLFEKRPKQFGIGGVLPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPLALNHITKTLNKNLGQTNFYSVGSDINIVVM* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0959 154 PRINTS Ribosomal protein L7A family signature 82 99 IPR001921 -
Vra6g0959 154 PRINTS Ribosomal protein L7A family signature 99 116 IPR001921 -
Vra6g0959 154 PRINTS Ribosomal protein L7A family signature 119 138 IPR001921 -
Vra6g0959 154 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 49 143 - -
Vra6g0959 154 Gene3D - 103 146 IPR029064 -
Vra6g0959 154 PANTHER BNAA03G47020D PROTEIN 49 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0959 Vra-Chr6 10728171 10739797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0959 71 142 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 73.611 1.10e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0959 K02936 - vra:106770156 125.176