Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0950 ATGCATTCAATGGCTTCTTCCTTATGCAACAACATCTTCCTCTTACTTTTTTTGCTTAATGTTCTTTCCTCCATAGGGCCATATCCAGTTGCAGTTCATTCAGCTGGTGATGCTCCGATTAATGTGACAAAGCACTTTTCCTTCTACAATTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATGTGAAGCTTCTTGGCAGTGCTAAGTTCTCAGATGAAAAGGGTTCTCTTCAAATCCCAGATGAGTCACAATACGCAGACATAAGACACCAAGCTGGTAGAGGCATCTATTCCTTCCCAATTCGCCTGCTAGATCCAACCACCAAGACCCCAGCTTCCTTTCAAACAACTTTCTCTTTTCAGCTCAACAATTCCACTGCCTCTGAGCAAGCTGCATATGGGGGTAGTGGCCTCACTTTCATCATTGTCCCTGATGAGTTCACTGTGGGAAGGCCCGGGCCATGGCTTGGCATGCTCAATGATGCTTGTGAAAATGACTACAAGGCAGTGGCCGTGGAGTTTGACACAAGAAAGAACCCAGAGTTTGGAGATCCTAATGACAACCATGTTGGCATCAACTTAGGTACCATAGTATCTACCAAAGTTATCAATGTTTCTGATGTTGGAGTTTCCCTTAAGGATGGTTTTGTTCACCGCGCTTGGATAACCTACGATGGTCCTCAGAGGAGAATGGATATTCGTCTTGGAAGGGCCAATGAAGAGGATTATCCTTCCACACCTATCTTCTCAGAATCTTTGGATCTCTCTCCTTATCTGAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACCGGTAACCATACACAAATCCACAACATACTCTCTTGGAACTTCACTTCTGTAAGCCAAGCTTTTCTGCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACAGCAGCACCAACTACTGAGAAGTCTTCTAAGAATGAGCCACCAAAAAGCTTTTTGATTTTTATGGCTTCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGCTTTTACTTCATCAGCAGGCACAGGAGAAATGCTTCCAAGATAAAGACTTCGGTGGAGACAGAGATTCACTTGCCAAGACCTCCAAACAAACCACGCCGCTTCACATTTTCTCAACTTTCATCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGCAGTGATTCTAGAGGAGAATACTACAGAGGAAAGCTTTCCAATGGAAGCCAGGTGGCTGTGAAAAGGTTCTCAACTCAGTTTCTCCACACACATGGATCAGACAAGAAGCGTTTGCTGAAGGAAATCAAAGTCATTGGCCATGTTCGCCACCCGAATTTGCTTCCTGTCAGAGGGTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGACTTTGTTCCCAATGGCAGCCTAGACAAATGGTTATTTGGCGCTGGTGTTCTTCCTTGGACTAGGAGATTCAAAGTTATTAAGGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCAACTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTTAACTTCAGAGCTGTTTTGGGTGATTTTGGGTTTGTGCTGTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGCCATGGTGCAGACGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGGTAAGGGATGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTGTTGGATTATGCTTGGAACTTGCATCAGATTGATGAGAAAGTTAAGCTGGTGGATAGAAGGATGGGATCATTGATCAACTTGGAGCAGGCAATTCGTGTTCTCGAAATTGGGTTGCTTTGCACCTTAAATGAGAACAAAGGAAGACCCTCAATGGAGCAAGTGGTGGAGTTTTTTCTGAACATGGATAAGCCCATTCCTGAACTGCCAAGAACTCGCCCTGTTTCCTTGTTCCCCTATAATAGCGCCAATACAGGACTTTGCAATACATATTCTTGCACTTTTTAG 2037 0.4467 MHSMASSLCNNIFLLLFLLNVLSSIGPYPVAVHSAGDAPINVTKHFSFYNFSFSNNPRLVHDVKLLGSAKFSDEKGSLQIPDESQYADIRHQAGRGIYSFPIRLLDPTTKTPASFQTTFSFQLNNSTASEQAAYGGSGLTFIIVPDEFTVGRPGPWLGMLNDACENDYKAVAVEFDTRKNPEFGDPNDNHVGINLGTIVSTKVINVSDVGVSLKDGFVHRAWITYDGPQRRMDIRLGRANEEDYPSTPIFSESLDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSVSQAFLRFPSSETCQGKILLENSTAAPTTEKSSKNEPPKSFLIFMASVALALALFLGFYFISRHRRNASKIKTSVETEIHLPRPPNKPRRFTFSQLSSSTRSFSEIELLGSDSRGEYYRGKLSNGSQVAVKRFSTQFLHTHGSDKKRLLKEIKVIGHVRHPNLLPVRGWCQDNHEIMVVYDFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHTKQLAHKNLKCSSVFLDVNFRAVLGDFGFVLLGAESKQFESAVCHGADVFEFGVLVLEVIAGRVRDEKEEGNPEERNLLDYAWNLHQIDEKVKLVDRRMGSLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFFLNMDKPIPELPRTRPVSLFPYNSANTGLCNTYSCTF* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0950 678 PANTHER - 18 660 - -
Vra6g0950 678 SUPERFAMILY Protein kinase-like (PK-like) 373 660 IPR011009 -
Vra6g0950 678 CDD lectin_legume_LecRK_Arcelin_ConA 45 288 IPR001220 GO:0030246
Vra6g0950 678 Pfam Protein tyrosine and serine/threonine kinase 395 536 IPR001245 GO:0004672|GO:0006468
Vra6g0950 678 Gene3D - 43 295 - -
Vra6g0950 678 ProSiteProfiles Protein kinase domain profile. 391 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0950 678 Gene3D Transferase(Phosphotransferase) domain 1 471 549 - -
Vra6g0950 678 Gene3D Transferase(Phosphotransferase) domain 1 550 649 - -
Vra6g0950 678 Gene3D Phosphorylase Kinase; domain 1 350 470 - -
Vra6g0950 678 ProSitePatterns Legume lectins beta-chain signature. 171 177 IPR019825 -
Vra6g0950 678 Pfam Legume lectin domain 45 291 IPR001220 GO:0030246
Vra6g0950 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2-LIKE 18 660 - -
Vra6g0950 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 288 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0950 Vra-Chr6 10564719 10567512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0950 44 661 Receptor kinase-like Gene Family AT5G55830 31.450 9.13e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0950 Lectin_legB 3.6e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0950 - - gmx:100781464 1191.02