Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0948 ATGAGTGACATGGAGAGAGCAATGGAAGAAAAGAAAAGGAGGGGTTTGAAGGATTGTTTGACATCATGGAAGGTTGTATTGAGCATGATAATGGTGCAAGGTTTTGTTACAGGGATGCAGCTTCTTTCAAGGGTCATTTTGGTTCAGGGTTCCTTCATCTTTTCACTCATTGCATATCGCCATATTATTGCTGCACTTTGTGTTGCACCTTTTGCTCTTTACTTTGAGAGAATGACTATGGCTCAAGGCTTATTCTATTATGGGCTGAGAGATACTTCAGCTACTTACTCTGCTAACTTTCTCAACATGGTTCCAATATGCACATTCCTCACCTCAGTCATCTTCAGATTGGAGAAATTGGGGCTGAAAAGTTGGACTGGTAGAACTAAGTGTGCAGGGGCAATTTTGTGTGTTGGTGGAGCATTACTTACCAGTCTTTACAAAGGCAAACAATTTTATCTTTTTCATCATAGTTATCATGCTCATACTGCTATTGCACCTCACCCAACTCACATGCTTCGGGGTACTTTCCTTTTGATCAGCAGCTGCTTCTCATACACAGCTTGGTTTCTTCTACAAGTCCAATTGCTTAAAGTATTTCCACTGAGGTATTGGGGAACAATGCTATCATGCGTTATAGCAGCAATTCAAGCAGCAATCGTAGGTGTCTGCATAGATTCTAGTAAAGCTGCTTGGAGATTAGAGTGGAATCTACAACTGGTCACCATAATCTACTCTGGAGCACTGGCTACTGCTGCTACATTCTGCATACTATCTTGGGCAATAACAATCAAAGGACCTACTTATCCTTCAATGTTCAATCCGCTCTCTCTTATTTTTGTGGCCTTTTCAGAAGCACTCGTAATTGGACAGCCACTCACCTTTGGAACGTTGTTGGGCATGGTTTTGATCATAGTTGGGTTGTACTCCTTCTTGTGGGGAAAAAGTAATGAGAAAAAGGGCATCACTCAACAACCAATTGTGGCAGCTGCAGAAGTATCAAATATCTCTGATTTGATTGCTGGGGCAGAATCAACAGCCACAGTAGTGCCAAGTTCTTCACCGCTGAATACTCTAGATTTGCAACATGATGCTCCTCACAAAAATTGA 1110 0.4171 MSDMERAMEEKKRRGLKDCLTSWKVVLSMIMVQGFVTGMQLLSRVILVQGSFIFSLIAYRHIIAALCVAPFALYFERMTMAQGLFYYGLRDTSATYSANFLNMVPICTFLTSVIFRLEKLGLKSWTGRTKCAGAILCVGGALLTSLYKGKQFYLFHHSYHAHTAIAPHPTHMLRGTFLLISSCFSYTAWFLLQVQLLKVFPLRYWGTMLSCVIAAIQAAIVGVCIDSSKAAWRLEWNLQLVTIIYSGALATAATFCILSWAITIKGPTYPSMFNPLSLIFVAFSEALVIGQPLTFGTLLGMVLIIVGLYSFLWGKSNEKKGITQQPIVAAAEVSNISDLIAGAESTATVVPSSSPLNTLDLQHDAPHKN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0948 369 PANTHER WAT1-RELATED PROTEIN 23 78 IPR030184 GO:0016021|GO:0022857
Vra6g0948 369 PANTHER WAT1-RELATED PROTEIN 78 332 IPR030184 GO:0016021|GO:0022857
Vra6g0948 369 PANTHER WAT1-RELATED PROTEIN 23 78 - -
Vra6g0948 369 PANTHER WAT1-RELATED PROTEIN 78 332 - -
Vra6g0948 369 Pfam EamA-like transporter family 174 311 IPR000620 GO:0016020|GO:0016021
Vra6g0948 369 Pfam EamA-like transporter family 78 144 IPR000620 GO:0016020|GO:0016021
Vra6g0948 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 59 148 - -
Vra6g0948 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0948 Vra-Chr6 10475807 10479631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0948 24 340 Nodulin-like Gene Family AT1G44800 31.965 3.19e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0948 - - gmx:100792281 528.094